Open susvej opened 8 months ago
I work in a colab, trying to generate documentation with instances from an ontology.
Command: !ontospy gendocs -o /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023docs/ontospy_gen_docs -i --type 2 /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl -v
Expected result: generation of documentation, including instances.
Actual result:
Ontospy v2.1.1 Loading graph... Reading: </content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl> .. trying rdf serialization: <xml> ..... success! ---------- Loaded 315 triples. ---------- RDF sources loaded successfully: 1 of 1. ..... '/content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl' ---------- Scanning entities... ---------- Ontologies.........: 1 Classes............: 10 Properties.........: 22 ..annotation.......: 1 ..datatype.........: 8 ..object...........: 13 Concepts (SKOS)....: 0 Shapes (SHACL).....: 0 Individuals........: 41 ---------- Building visualization... Error: Pygmentize Failed Error: Pygmentize Failed Traceback (most recent call last): File "/usr/local/bin/ontospy", line 8, in <module> sys.exit(main_cli()) File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1157, in __call__ return self.main(*args, **kwargs) File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1078, in main rv = self.invoke(ctx) File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, **ctx.params) File "/usr/local/lib/python3.10/dist-packages/click/core.py", line 783, in invoke return __callback(*args, **kwargs) File "/usr/local/lib/python3.10/dist-packages/click/decorators.py", line 33, in new_func return f(get_current_context(), *args, **kwargs) File "/usr/local/lib/python3.10/dist-packages/ontospy/cli.py", line 303, in gendocs url = action_visualize( File "/usr/local/lib/python3.10/dist-packages/ontospy/core/actions.py", line 699, in action_visualize url = build_visualization(g, viztype, path, title, theme) File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/actions.py", line 147, in build_visualization url = v.build(path) File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/viz_factory.py", line 73, in build self.final_url = self._buildTemplates() File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/viz/viz_html_multi.py", line 208, in _buildTemplates contents = self._renderTemplate( File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/viz_factory.py", line 105, in _renderTemplate contents = safe_str(t.render(context)) File "/usr/local/lib/python3.10/dist-packages/jinja2/environment.py", line 1301, in render self.environment.handle_exception() File "/usr/local/lib/python3.10/dist-packages/jinja2/environment.py", line 936, in handle_exception raise rewrite_traceback_stack(source=source) File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/media/templates/html-multi/browser/browser_individualinfo.html", line 1, in top-level template code {% extends "html-multi/base.html" %} File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/media/templates/html-multi/base.html", line 214, in top-level template code {% block bodycontent %} File "/usr/local/lib/python3.10/dist-packages/ontospy/gendocs/media/templates/html-multi/browser/browser_individualinfo.html", line 56, in block 'bodycontent' {% for s in each.instance_of %} TypeError: 'method' object is not iterable
Please note that this command in the same colab generates all the documentation. The only difference is the absence of the -i or --individuals tag
Command: !ontospy gendocs -o /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023docs/ontospy_gen_docs --type 2 /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl
Result:
Loading graph... Building visualization... Error: Pygmentize Failed Error: Pygmentize Failed Done. => file:///content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023docs/ontospy_gen_docs/index.html ----------- Time: 4.02s
Follow up: Running the code above will generate all class and property html sites, and will link the instances to them - but it will NOT generate html sites for the individuals.
I work in a colab, trying to generate documentation with instances from an ontology.
Command: !ontospy gendocs -o /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023docs/ontospy_gen_docs -i --type 2 /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl -v
Expected result: generation of documentation, including instances.
Actual result:
Please note that this command in the same colab generates all the documentation. The only difference is the absence of the -i or --individuals tag
Command: !ontospy gendocs -o /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023docs/ontospy_gen_docs --type 2 /content/drive/MyDrive/Temperatur/Ontology/LingTempOntOct2023/lingtempontology_oct24_2023_ontoology_rdf.owl
Result: