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laminlabs
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bionty
Registries for biological entities, coupled to public ontologies.
Apache License 2.0
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Maybe broken the build
#169
mossjacob
opened
2 hours ago
2
✨ Reintroduce taxa
#168
Zethson
closed
15 hours ago
1
🔊 Raise error if organism can't be created from bionty
#167
sunnyosun
closed
15 hours ago
1
💚 Test CI
#166
sunnyosun
closed
17 hours ago
0
Try to understand why `.lamindb_current_sources.yaml` is sometimes deleted.
#165
Zethson
opened
19 hours ago
0
🎨 Polish code
#164
Zethson
closed
1 day ago
1
Disentangle organism and taxa better
#163
Zethson
opened
1 day ago
0
🎨 Squash migrations
#162
sunnyosun
closed
3 days ago
0
✅ Clean up test properly
#161
Zethson
closed
4 days ago
1
`import_source` currently only supports `ensembl_gene_id` but not `stable_id` or other IDs
#160
Zethson
opened
4 days ago
0
Fix jobs run on fork CI
#159
Zethson
closed
5 days ago
0
🎨 Use field defaults
#158
sunnyosun
closed
4 days ago
0
✨ Add fork protected CI
#157
Zethson
closed
5 days ago
1
✨Add support for local source files
#156
mossjacob
closed
19 hours ago
6
Add plant genes
#155
Zethson
opened
6 days ago
0
Add PO to Tissue
#154
Zethson
opened
6 days ago
0
✨ Support `taxa="plants"` in `EnsemblGene`
#153
mossjacob
closed
1 day ago
24
Added source does not show up in lamindb instance
#152
mossjacob
closed
1 week ago
14
No `import_from_source` for `CellMarker`
#151
Zethson
opened
1 week ago
0
🎨 Rename import_from_source
#150
Zethson
closed
1 week ago
1
📝 Add symbol mapping FAQ reference to Gene
#149
Zethson
closed
5 days ago
1
📝 Fix keep docstring standardize gene
#148
Zethson
closed
1 week ago
1
✨ Add field support for bionty base
#146
Zethson
closed
1 week ago
1
standardize docstring broken for gene
#147
Zethson
closed
1 week ago
0
🎨 Raise `OrganismNotSet` instead of `AssertionError` when `organism` is not set
#144
Zethson
closed
2 weeks ago
5
Be more opinionated about mapping symbols vs ensembl IDs
#143
Zethson
closed
1 week ago
1
`import_from_source` fails when no `parents` column is present.
#141
Zethson
opened
2 weeks ago
0
`import_from_source` picks the top `currently_used` source
#140
Zethson
opened
2 weeks ago
0
`import_from_source` errors for CellLine
#139
Zethson
opened
2 weeks ago
0
🎨 Proper deprecation warning
#138
Zethson
closed
3 weeks ago
1
Improve error message or skip when attempting to save new gene records with same symbol
#137
Zethson
closed
2 weeks ago
0
🐛 Hide from_public from TOC
#135
Zethson
closed
3 weeks ago
1
Remove `from_public`
#134
Zethson
closed
3 weeks ago
0
Better function signature documentation for `from_source`
#136
Zethson
opened
4 weeks ago
0
KeyError: 'FieldAttr(Gene.symbol)' when trying to validate against public Gene
#145
Zethson
closed
1 week ago
1
Reduce specify organism error message
#142
Zethson
closed
2 weeks ago
1
🚚 Add unique constraints and fix `gene_ref_is_symbol` to `label_ref_is_name`
#133
falexwolf
closed
1 month ago
1
Add unique constraints for the combination label, artifact, feature
#132
falexwolf
opened
1 month ago
0
🔥 Remove `.list_source()`
#130
sunnyosun
closed
1 month ago
1
🎨 Remove update in add_ontology_from_df
#129
sunnyosun
closed
1 month ago
1
Add new Disease source: `ordo`
#128
sunnyosun
opened
1 month ago
5
📝 More consistent and simpler docs
#127
falexwolf
closed
1 month ago
1
🍱 New ExperimentalFactor version: efo-3.70.0
#126
Zethson
closed
1 month ago
1
Remove md5 related code
#125
Zethson
opened
1 month ago
0
Update Experimental Factor Ontology to 3.67+
#124
andreassteffen
closed
1 month ago
2
⚡ Lazy reload of module upon `ln.connect()`
#123
falexwolf
closed
1 month ago
0
🎨 Do not require organism if field is ontology_ud or uid
#122
sunnyosun
closed
1 month ago
1
📝 Fix bulk create ref
#121
Zethson
closed
2 months ago
1
📝 Improve map_legacy_ids docs
#120
Zethson
closed
2 months ago
1
Integrate map_legacy_ids into standardize and improve documentation
#119
Zethson
opened
2 months ago
0
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