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laminlabs
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bionty
Registries for biological entities, coupled to public ontologies.
Apache License 2.0
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🐛 Fix parents update
#107
sunnyosun
closed
4 days ago
1
🐛 `BioRecord.import_from_source(update=True)` doesn't update parents
#106
sunnyosun
opened
4 days ago
0
🎨 Remove reverse relationship from Source to biorecord
#105
sunnyosun
closed
5 days ago
1
🚚 Unlink backward relationship with `Run` & `User`
#104
falexwolf
closed
5 days ago
1
🎨 Do not track source dataframe as run input
#103
sunnyosun
closed
1 week ago
1
📝 Fix docs for use with inheritance, formatting errors, and refactor
#102
falexwolf
closed
1 week ago
1
Lots of non user-facing instance methods rendered in documentation
#101
Zethson
closed
1 week ago
3
🎨 Move the source FK to BioRecord
#100
sunnyosun
closed
2 weeks ago
1
Should directly link to the respective ontology access pages
#99
Zethson
opened
2 weeks ago
0
`.public()` is not documented
#97
Zethson
closed
1 week ago
0
🍱 New `CellLine` version: `depmap-2024-Q2`
#96
Zethson
closed
3 weeks ago
1
Add depmap IDs to cell line
#95
Zethson
closed
3 weeks ago
0
Request to Add 'Normal' Record to bt.Disease
#98
Kang-chen
opened
3 weeks ago
7
🍱 New Drug version: chebi-2024-07-27
#94
Zethson
closed
3 weeks ago
1
:memo: Delete comparison
#93
Zethson
closed
3 weeks ago
1
✨ Allow add source to entity
#92
sunnyosun
closed
3 weeks ago
1
:memo: Move bionty-base docs
#91
Zethson
closed
3 weeks ago
3
:bug: Fix installation order
#90
Zethson
closed
4 weeks ago
2
✏️ Fix key_is_virtual
#89
sunnyosun
closed
4 weeks ago
1
register_source_in_bionty_assets uses Artifact keyword _key_is_virtual for constructor but does not pass kwarg length check
#88
Zethson
closed
4 weeks ago
0
✨ Add include_rel & update DevelopmentalStage and Tissue
#87
Zethson
closed
4 weeks ago
19
Simplify BFXPipeline
#86
Zethson
closed
1 month ago
1
✨ Add register_source_in_bionty_assets
#85
sunnyosun
closed
1 month ago
1
✨ Move to parquet for bfxpipelines
#84
Zethson
closed
1 month ago
1
Store bfxpipelines as parquet file
#83
Zethson
closed
1 month ago
0
🐛 Add dron missing entry
#82
Zethson
closed
1 month ago
1
🎨 Make `source_artifact_of` and `source_dataframe_of` private
#80
sunnyosun
closed
1 month ago
1
🧪 Write tests for the admin functions
#79
sunnyosun
opened
1 month ago
0
🐛 Fix `set_as_currently_used`
#78
sunnyosun
closed
1 month ago
1
🎨 Increase the max length of Protein.gene_symbol
#77
sunnyosun
closed
1 month ago
1
✨ Add compound model
#76
Zethson
closed
1 month ago
4
💚 Fix ci
#75
sunnyosun
closed
1 month ago
1
Update readme and show coverage
#74
falexwolf
closed
3 weeks ago
2
Pronto cannot read ncbitaxon 2024-08-05
#73
Zethson
opened
1 month ago
0
🚸 Make `source_artifact_of` and `source_dataframe_of` private
#72
falexwolf
closed
1 month ago
2
🍱 New ontology: Tissue-uberon-2024-05-13 Phenotype-zp-2024-04-18
#71
Zethson
closed
1 month ago
0
🍱 New ontology: Pathway-pw-7.84
#70
Zethson
closed
1 month ago
0
🍱 New ontology: Phenotype-pato-2024-03-28
#69
Zethson
closed
1 month ago
0
🍱 New ontology: Phenotype-mp-2024-06-18
#68
Zethson
closed
1 month ago
0
🍱 New ontology: Disease-mondo-2024-06-04
#67
Zethson
closed
1 month ago
0
🍱 New ontology: Phenotype-hp-2024-04-26
#66
Zethson
closed
1 month ago
0
🍱 New ontology: Pathway-go-2024-06-17
#64
Zethson
closed
1 month ago
0
🍱 New ontology: ExperimentalFactor-efo-3.66.0
#63
Zethson
closed
1 month ago
0
Pronto cannot read EFO 3.67.0
#65
Zethson
opened
1 month ago
0
🍱 New ontology: Drug-dron-2024-08-05
#62
Zethson
closed
1 month ago
0
🍱 Create `laminlabs/bionty-assets` to track public source files
#61
sunnyosun
closed
3 weeks ago
1
🍱 New ontology: Disease-doid-2024-05-29
#60
Zethson
closed
1 month ago
0
✨ New ontology: CellType-cl-2024-05-15
#59
Zethson
closed
1 month ago
0
🍱 2024-08: Update sources to latest
#58
Zethson
closed
1 month ago
5
✨ Add update ontologies script
#57
Zethson
closed
1 month ago
0
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