Lookup case sensitivity

[Zethson]

I had data like "Celiac disease" and tried finding a match with

disease_bionty = bt.Disease(source="mondo", version="2023-02-06")
disease_bionty_lookup = disease_bionty.lookup()

but I could not find any matches with disease_bionty_lookup.Celiac[...]. The actual match is disease_bionty_lookup.celiac_disease -> lower case. I know how the lookup is constructed, but is there any reasonable way to make the match easier? Sure, fuzzy matching would have found this super easily with case_sensitive=False

[Zethson]

I'd like to further point out that the result is: DOID:10608 (using MONDO atm). In other words, filtering only for MONDO ids may not be the right thing to do with the MONDO ontology. I'll need to check this out.

[sunnyosun]

Thank you for raising it! I also really don't like that lookup is case-sensitive, maybe namedtuple isn't the ideal way to go (it was just the most lightweight implementation with autocompletion).

Need to look into more!

[sunnyosun]

I found a good implementation! https://stackoverflow.com/a/32107024

I'd just switch to this one, it also perfectly avoided conversion to pythonic keys that doesn't allow special characters, because one can do both lookup. and lookup[""]!

[Zethson]

The solution:

from jedi import settings
settings.case_insensitive_completion = True

[Zethson]