♻️ Harmonize code for Gene, Protein, CellMarker

[sunnyosun]

• Updated sources.yaml to include s3 paths for Gene, Protein, CellMarker
• Updated versions of Gene and Protein assets
• All entities are now using the same code to handle download and local files (except for species)
• Allow download directly from user-provided parquet file (reference table) as url in yaml
• Moved bfxpipelines_data folder to s3

[github-actions[bot]]

🚀 Deployed on https://648afe1279c2e100839239a6--bionty-kyow.netlify.app

[codecov[bot]]

Codecov Report

Merging #443 (13e06eb) into main (f4e5c5f) will decrease coverage by 0.10%. The diff coverage is 42.04%.

:exclamation: Current head 13e06eb differs from pull request most recent head f2fe1f0. Consider uploading reports for the commit f2fe1f0 to get more accurate results

@@            Coverage Diff             @@
##             main     #443      +/-   ##
==========================================
- Coverage   77.12%   77.02%   -0.10%     
==========================================
  Files          28       27       -1     
  Lines         835      740      -95     
==========================================
- Hits          644      570      -74     
+ Misses        191      170      -21     

Impacted Files	Coverage Δ
bionty/entities/_gene.py	91.66% <ø> (+6.48%)	:arrow_up:
bionty/entities/_protein.py	85.71% <ø> (+58.21%)	:arrow_up:
bionty/entities/_readout.py	38.59% <0.00%> (-2.15%)	:arrow_down:
bionty/entities/_species.py	45.00% <0.00%> (-5.00%)	:arrow_down:
bionty/_ontology.py	43.75% <15.78%> (-32.73%)	:arrow_down:
bionty/entities/_bfxpipeline.py	60.00% <33.33%> (-1.12%)	:arrow_down:
bionty/dev/_io.py	57.89% <37.50%> (-2.82%)	:arrow_down:
bionty/_bionty.py	87.32% <73.68%> (+4.97%)	:arrow_up:
bionty/__init__.py	100.00% <100.00%> (ø)
bionty/entities/_cellmarker.py	92.85% <100.00%> (-0.90%)	:arrow_down:

... and 1 file with indirect coverage changes

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more