laminlabs lamindb issues

laminlabs / lamindb

A data framework for biology.

https://docs.lamin.ai

Apache License 2.0

129 stars 12 forks source link

issues

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Simplify templates

#2220 falexwolf opened 3 hours ago
0
How to disable warning `! run input wasn't tracked, call ln.track() and re-run`?

#2219 jkobject opened 4 hours ago
2
✨ Improve adding and retrieving feature values

#2218 falexwolf opened 5 hours ago
3
⚡ `Curator.validate()` is too slow

#2217 falexwolf opened 9 hours ago
2
🩹 Add a lower bound on nbconvert to avoid problems with lxml

#2216 Koncopd closed 23 hours ago
2
🐛 Check protocol first in check_path_is_child_of_root

#2215 Koncopd closed 1 day ago
2
Check import error on ln.finish

#2214 Koncopd closed 23 hours ago
0
✨ Support auto-knitted html reports during `ln.finish()`

#2213 falexwolf opened 1 day ago
2
Improve the "pass a dtype" message for Feature constructor

#2212 Zethson opened 1 day ago
0
🚸 Curator logging

#2211 falexwolf opened 1 day ago
1
📝 Prettify gene symbols guide & logging

#2210 falexwolf closed 1 day ago
3
🚸 Clearer ValidationError in Curator when categoricals contains inexistent columns

#2209 falexwolf opened 1 day ago
0
💚 Fix tiledbsoma installation in CI

#2208 Koncopd closed 2 days ago
2
♻️ Simplify coupling of `bionty` and `lamindb-setup`

#2207 falexwolf closed 2 days ago
3
🚸 Passing anything other than a Q expression as an arg to filter should error, not return a random queryset

#2206 falexwolf opened 3 days ago
4
🎨 Make search in bionty consistent with the lamindb implementation

#2205 Koncopd closed 4 days ago
2
huggingface_hub required when an instance has a storage with a huggingface path

#2204 Koncopd closed 1 day ago
1
Colors don't seem to be "html safe"

#2203 Zethson opened 4 days ago
0
Make finish stdout message "save ... script.py" more general

#2202 Zethson opened 4 days ago
0
Hide underscore attributes

#2201 Zethson opened 4 days ago
4
Do not show track warning when passing `run=False`

#2200 sunnyosun opened 4 days ago
0
🩹 Make search rules the same across all systems

#2199 Koncopd closed 4 days ago
2
Remove self.kwargs leftover argument

#2198 mossjacob opened 5 days ago
1
⬆️ Update core

#2197 sunnyosun closed 5 days ago
2
🚸 Mark `.qmd` & `.Rmd` files as notebooks, not scripts

#2196 falexwolf closed 5 days ago
2
⬆️ Upgrade lamin-utils

#2195 Koncopd closed 6 days ago
2
⬆️ Upgrade lamindb-setup

#2194 Koncopd closed 6 days ago
2
Type `.qmd` and `.Rmd` as `notebook` in `ln.track()`

#2193 falexwolf opened 6 days ago
0
hf warning

#2192 falexwolf closed 6 days ago
7
✨ Rename `organism` to `taxa` for bionty Organism

#2191 Zethson closed 5 days ago
0
:art: Test bionty CI

#2190 Zethson closed 6 days ago
0
⬆️ Prepare release

#2189 sunnyosun closed 6 days ago
12
🔊 Prompt to use laminr on trying to load .rds files

#2188 Koncopd closed 1 week ago
1
source schema has additional modules: {'findrefs'}

#2187 jkobject closed 1 week ago
1
♻️ Add `.standardize()` to `Curator`

#2186 sunnyosun opened 1 week ago
4
🩹 Check anndata version to import read_zarr

#2185 Koncopd closed 1 week ago
1
📝 Move `tutorial` and `tutorial2` to `lamin-docs`

#2184 falexwolf closed 1 day ago
5
⚡️ Additional search rule for truncated searches

#2183 Koncopd closed 1 week ago
2
Should `Curator.validate()` work with only read permissions?

#2182 Zethson opened 1 week ago
2
🚸 Upon re-running `init` with an additional schema module (or less schema module) update settings.env

#2181 falexwolf opened 1 week ago
0
🚸 Creating a local instance for the cwd

#2180 falexwolf opened 1 week ago
0
📝 Add a selection menu to create the installation command

#2179 falexwolf opened 1 week ago
0
📝 Investigate cell type output

#2178 falexwolf opened 1 week ago
0
✨ Enable Django field validation and Literal validation

#2177 sunnyosun closed 1 week ago
4
🚸 Refactor `ln.track()` to improve logging and method signature

#2176 falexwolf closed 1 week ago
2
📝 Improve "manage biological registries guide"

#2175 falexwolf opened 1 week ago
0
🚚 Rename `.add_new_from_columns()` to `.add_new_from_obs_columns()`

#2174 falexwolf opened 1 week ago
0
🚸 Do not show notebook package version information if no uid is present

#2173 falexwolf closed 1 week ago
1
✨ Add an artifact loader for `.yaml`

#2172 rcannood opened 1 week ago
7
📝 Document deleting objects & removing annotations more clearly

#2171 falexwolf opened 1 week ago
0