lamm-mit / ProteinMechanicsDiffusionDesign

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Colab issue #2

Open steven0seagal opened 5 months ago

steven0seagal commented 5 months ago

Hi, I run your method on Colab and unfortunatelly it returns me with error:

Done OmegaFold
Resulting PDB file...:  /content/working_results/4_test_individual_cases/temp_100.pdb
---------------------------------------------------------------------------
FileNotFoundError                         Traceback (most recent call last)
[<ipython-input-14-9eb69eb6a91a>](https://localhost:8080/#) in <cell line: 43>()
     89             print("\n\n")
     90             DeNovoSam_pdbs, DeNovoSam_fasta = \
---> 91             TrainerPack.sample_sequence_omegafold_pLM_ModelB_For_ForcPath (
     92                 working_model,
     93                 x_data=de_novo_test_condition_list[:Sample_for_the_first_N_inputs], # [:2],

2 frames
[/usr/lib/python3.10/shutil.py](https://localhost:8080/#) in copyfile(src, dst, follow_symlinks)
    252         os.symlink(os.readlink(src), dst)
    253     else:
--> 254         with open(src, 'rb') as fsrc:
    255             try:
    256                 with open(dst, 'wb') as fdst:

FileNotFoundError: [Errno 2] No such file or directory: '/content/working_results/4_test_individual_cases/temp_100.pdb'

Correct output would be helpfull for me to understand your tool.

Astruj commented 3 months ago

I am also facing same issue... Kindly respond