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lamoureux-lab / TorchProteinLibrary

PyTorch library of layers acting on protein representations
https://lamoureux-lab.github.io/TorchProteinLibrary/
MIT License
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Accelerate TypedCoords2Volume #10

Closed lupoglaz closed 4 years ago

lupoglaz commented 5 years ago

This layer is still a bottleneck in many algorithms. We need to accelerate it using standard Kernel estimation algorithms, like this: http://nuklei.sourceforge.net/doxygen/group__kernels.html

lupoglaz commented 4 years ago

Acceleration of TypedCoords2Volume forward pass using hash table is implemented in f4f013b14b66b216476bb9f478146cc08d692bec