search

lamoureux-lab / TorchProteinLibrary

PyTorch library of layers acting on protein representations
https://lamoureux-lab.github.io/TorchProteinLibrary/
MIT License
116 stars 23 forks source link

Benchmarking #14

Open lupoglaz opened 5 years ago

lupoglaz commented 5 years ago

We need benchmarks for speed and memory usage for all the layers. Right now it's hard to predict run time of a new algorithm.

lupoglaz commented 5 years ago

Commit 2489862144c0a709fe322ab146a9786cf6f2f01e added basic benchmarks for FullAtomModel.Angles2Coords, RMSD.Coords2RMSD and ReducedModel.Angles2Backbone. Also, added comparative time scales from LSTM