Closed valeryozenne closed 3 years ago
Regarding Dicomifier:
dicomifier-cli
). I usually package the two latest Ubuntu LTS, but packages for intermediate versions can be created upon request. The official packages (in Debian, tracked by Ubuntu) are usually a bit behind, but you might be lucky.Now, to get back to the Odil issue :)
It's probably caused by the fact that CMake is picking up a Python2 interpreter, which is not supported anymore by Odil (nor by Python devs themselves for that matter). You can force the interpreter by passing -DPYTHON_EXECUTABLE=/usr/bin/python3
to CMake (sample build workflows are show in the CI directory).
If you're stuck with Python 2, I can try and fix this, but it won't be a stable solution: since dependencies of Dicomifier (mostly pybind11 and numpy) are also dropping support for Python 2, any fix will stop working at some random point in the future.
Using python 3 for Odil solve the error . And the installation via apt is also convenient. Thanks a lot,
Hi,
I have some difficulties to compile odil and dicomifier on a recent ubuntu 20.04
I first install odil 1.1 using the package manager but dicomifier complain in the cmake.
So I try to compile odil 1.2 but the compilation stopped. Please find below the error message and the corresponding cmake . Maybe I'm missing some libraries ?
Thanks a lot in advance!
Valéry
ps : Dicomifier is really really helpful for converting bruker diffusion data and gradient scheme. How can I cite/reference the tools in publication ?