How to make input csv files from 10x cellranger pipelines?

lanagarmire / Granatum

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How to make input csv files from 10x cellranger pipelines? #3

Open Yoon-Seob-Kim opened 6 years ago

Yoon-Seob-Kim commented 6 years ago

Hello I am trying to use Granatum for secondary analysis of single cell RNAseq result from Cellranger (10x) I have difficulty in making input csv files from 10x cellranger pipelines. Is there any possible ways? Linux cellranger mat2csv command did not work due to huge file size..