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lanagarmire / Single-cell-drug-repositioning

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Couldn't find some example data such as TNBC_SCdata.rds and TNBC_genelist_limma.rds #1

Open zyb1984 opened 1 year ago

zyb1984 commented 1 year ago 
          Couldn't find the example data TNBC_SCdata.rds and TNBC_genelist_limma.rds,  also the same problem with the example data COVID_SCdata_annotated.rds, COVID19_genelist_limma.rds, TALL_SCdata_all.rds, TALL_SCdata_Tcell.rds, and TALL_genelist_limma.rds
eshinesimida commented 1 year ago

SC.integrated=readRDS("TNBC_SCdata.rds") Error in gzfile(file, "rb") : cannot open the connection In addition: Warning message: In gzfile(file, "rb") : cannot open compressed file 'TNBC_SCdata.rds', probable reason 'No such file or directory'

hebinghb commented 1 year ago

Dear all, these files are the temporary results saved by the scripts, not the example data. If this is the first time to run the code, please run the entire code to obtain them and ensure you have downloaded the GSE datasets, which were loaded at the beginning of the code. Thanks!

eshinesimida commented 1 year ago

Thank you very much