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lanagarmire / deepimpute

An accurate and efficient deep learning method for single-cell RNA-seq data imputation
MIT License
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Fails to run on windows #10

Closed jkanche closed 4 years ago

jkanche commented 4 years ago

Hello,

DeepImpute fails to run properly on windows since it tries to save the model to /tmp which doesn't exist.

https://github.com/lanagarmire/deepimpute/blob/027a33a97dbca401ccdceeabfea665943f082fb5/deepimpute/multinet.py#L87

my solution to get this running was to change the location to os.getcwd(). I thought this might help others running into the same issue!

Jay

Puumanamana commented 4 years ago

Hi Jay,

Thank you for reporting this issue. I pushed an update and it should use the correct temporary directory whatever OS you are using. Let me know if it did not work.

jkanche commented 4 years ago

thanks for updating!