langchain-ai / langchain

🦜🔗 Build context-aware reasoning applications
https://python.langchain.com
MIT License
92.53k stars 14.82k forks source link

Error failed to index when using ElasticsearchStore.from_documents #10218

Closed mikysetiawan closed 1 year ago

mikysetiawan commented 1 year ago

System Info

Python : v3.10.10 Langchain : v0.0.281 Elasticsearch : v8.9.0

Who can help?

No response

Information

Related Components

Reproduction

I was following this documentation https://python.langchain.com/docs/integrations/vectorstores/elasticsearch my script was

# GENERATE INDEXING

loader = TextLoader("models/state_of_union.txt")
documents = loader.load()
text_splitter = CharacterTextSplitter(chunk_size=100, chunk_overlap=0)
docs = text_splitter.split_documents(documents)

embeddings = OpenAIEmbeddings()

db = ElasticsearchStore.from_documents(
    docs,
    embeddings,
    es_url="http://localhost:9200",
    index_name="test-basic", 
    es_user=os.environ.get("ELASTIC_USERNAME"),
    es_password=os.environ.get("ELASTIC_PASSWORD"),
)

but it raising an error when indexing the document

Created a chunk of size 132, which is longer than the specified 100
Created a chunk of size 107, which is longer than the specified 100
Created a chunk of size 103, which is longer than the specified 100
Created a chunk of size 104, which is longer than the specified 100
Error adding texts: 336 document(s) failed to index.
First error reason: failed to parse
Traceback (most recent call last):
  File "D:\Project\elastic-langchain\main.py", line 31, in <module>
    db = ElasticsearchStore.from_documents(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 1027, in from_documents
    elasticsearchStore.add_documents(documents)
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\base.py", line 101, in add_documents
    return self.add_texts(texts, metadatas, **kwargs)
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 881, in add_texts
    raise e
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 868, in add_texts
    success, failed = bulk(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 521, in bulk    
    for ok, item in streaming_bulk(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 436, in streaming_bulk
    for data, (ok, info) in zip(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 355, in _process_bulk_chunk
    yield from gen
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 274, in _process_bulk_chunk_success
    raise BulkIndexError(f"{len(errors)} document(s) failed to index.", errors)
elasticsearch.helpers.BulkIndexError: 336 document(s) failed to index.

Expected behavior

It can indexing and not raising any errror

dosubot[bot] commented 1 year ago

🤖

Hello,

Thank you for providing detailed information about the issue you're facing. The error message you're seeing, BulkIndexError: 336 document(s) failed to index., is raised when there's an issue with the bulk indexing operation in Elasticsearch.

Based on the error message, it seems like the documents are not being indexed properly. This could be due to a variety of reasons, such as issues with the connection to Elasticsearch, problems with the index creation, or issues with the documents themselves.

Here are a few things you can check:

  1. Connection to Elasticsearch: Make sure that you have a valid connection to your Elasticsearch instance. This could be a local instance or a cloud instance. You need to provide either a pre-existing Elasticsearch connection or valid credentials for creating a new connection.

  2. Index Creation: The index is created if it doesn't already exist when you're trying to add documents. If the index doesn't exist and the strategy requires inference (like ApproxRetrievalStrategy), you need to specify dims_length (the length of the embedding vectors).

  3. Documents: Check the documents that you're trying to index. The error message suggests that some documents failed to parse, which could indicate that there's something wrong with the documents themselves. Make sure that the documents are in the correct format and don't contain any invalid characters or fields.

  4. Embedding Function: If your strategy requires inference (like ApproxRetrievalStrategy), make sure you have provided an embedding function. This function is used to convert your texts into vectors that can be indexed.

If you've checked all of these points and the error still persists, it would be helpful if you could provide more information about the documents you're trying to index and the specific error message you're seeing. This will help us better understand the issue and provide a more specific solution.

Best, Dosu

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

@dosu-bot

  1. Connection to Elasticsearch = it's fine, because I try without .from_documents it's not giving any error, only empty result
  2. Index creation = it's already created, I checked from http://127.0.0.1:9200/test-basic/_mapping
{
    "test-basic": {
        "mappings": {
            "properties": {
                "vector": {
                    "type": "dense_vector",
                    "dims": 1536,
                    "index": true,
                    "similarity": "cosine"
                }
            }
        }
    }
}
  1. Documents : https://github.com/hwchase17/chat-your-data/blob/master/state_of_the_union.txt
  2. Embedding Function : as you can see, my code only using default indexing but it raises an error
dosubot[bot] commented 1 year ago

🤖

Hello,

The BulkIndexError you're encountering when trying to index documents using the ElasticsearchStore.from_documents function in the LangChain Python framework could be due to a variety of reasons.

One common cause of this error is when the size of the document exceeds the maximum limit set by Elasticsearch. Another possible cause could be a mismatch between the data type of the fields in your documents and the mapping defined in your Elasticsearch index.

In the LangChain framework, when a BulkIndexError is encountered, the error message from the first failed document is logged. This error message should provide more information about why the documents failed to index.

Here's the relevant code snippet from the from_documents method in the ElasticsearchStore class:

try:
    success, failed = bulk(
        self.client, requests, stats_only=True, refresh=refresh_indices
    )
    logger.debug(
        f"Added {success} and failed to add {failed} texts to index"
    )

    logger.debug(f"added texts {ids} to index")
    return ids
except BulkIndexError as e:
    logger.error(f"Error adding texts: {e}")
    firstError = e.errors[0].get("index", {}).get("error", {})
    logger.error(f"First error reason: {firstError.get('reason')}")
    raise e

You can find this code in the ElasticsearchStore class in the langchain/vectorstores/elasticsearch.py file.

To help us diagnose the issue, could you please provide the error message logged by logger.error(f"First error reason: {firstError.get('reason')}")? This should give us more information about why the documents failed to index.

Also, please ensure that the size of your documents does not exceed the maximum limit set by Elasticsearch and that the data type of the fields in your documents matches the mapping defined in your Elasticsearch index.

I hope this helps. Please let me know if you have any other questions or need further clarification.

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

@dosu-bot

thank you for your reply, the first error reason is First error reason: failed to parse

for the full error:

Error adding texts: 336 document(s) failed to index.
First error reason: failed to parse
Traceback (most recent call last):
  File "D:\Project\elastic-langchain\main.py", line 31, in <module>
    db = ElasticsearchStore.from_documents(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 1027, in from_documents
    elasticsearchStore.add_documents(documents)
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\base.py", line 101, in add_documents
    return self.add_texts(texts, metadatas, **kwargs)
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 881, in add_texts
    raise e
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\langchain\vectorstores\elasticsearch.py", line 868, in add_texts
    success, failed = bulk(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 521, in bulk    
    for ok, item in streaming_bulk(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 436, in streaming_bulk
    for data, (ok, info) in zip(
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 355, in _process_bulk_chunk
    yield from gen
  File "D:\Project\elastic-langchain\.venv\lib\site-packages\elasticsearch\helpers\actions.py", line 274, in _process_bulk_chunk_success
    raise BulkIndexError(f"{len(errors)} document(s) failed to index.", errors)
elasticsearch.helpers.BulkIndexError: 336 document(s) failed to index.

for the document that I use : https://github.com/hwchase17/chat-your-data/blob/master/state_of_the_union.txt

it's only 39kb

dosubot[bot] commented 1 year ago

🤖

Hello,

The BulkIndexError you're encountering is likely due to an issue with the indexing process in Elasticsearch. This error can occur when there's a problem with the pipeline, mappings, or the documents you're trying to index.

From the error message failed to parse, it seems like Elasticsearch is having trouble parsing the documents you're trying to index. This could be due to a mismatch between the structure of your documents and the mappings defined for your index.

The mapping you've provided indicates that you're trying to index a dense_vector field named vector. However, it's not clear from your message what the structure of your documents is. If your documents don't contain a vector field, or if the vector field is not a list of 1536 floating-point numbers, then Elasticsearch would fail to parse the documents, resulting in the error you're seeing.

To resolve this issue, you should ensure that your documents match the mappings defined for your index. Specifically, each document should contain a vector field that is a list of 1536 floating-point numbers.

If you're still encountering the error after ensuring that your documents match your mappings, it could be due to other factors such as an issue with the pipeline. If you're setting a default pipeline for your index, make sure that the pipeline exists in your Elasticsearch instance and that the pipeline id is correct. If you're not using a pipeline, you can remove the default_pipeline setting from your index settings.

I hope this helps! If you're still encountering issues, could you please provide more information about the structure of your documents? Specifically, it would be helpful to know what fields your documents contain and what the types of those fields are.

Best, Dosu

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

@dosu-bot

there is no problem with my indexes

{
    "test-basic": {
        "mappings": {
            "properties": {
                "vector": {
                    "type": "dense_vector",
                    "dims": 1536,
                    "index": true,
                    "similarity": "cosine"
                }
            }
        }
    }
}

also I'm not using any pipeline

dosubot[bot] commented 1 year ago

🤖

Hello,

The BulkIndexError with the message failed to parse usually occurs when Elasticsearch is unable to parse the data you're trying to index. This could be due to a mismatch in the data type or structure between your data and the index mapping.

In your case, the from_documents method is used to construct the ElasticsearchStore from documents. This method internally calls the _create_index_if_not_exists and bulk methods to create the index and add documents to it.

The BulkIndexError could be due to:

  1. The dims_length argument not being provided when the index is being created. This argument is required to set the dimensions of the dense_vector field in the index mapping. If the dimensions of the vectors in your documents do not match this value, Elasticsearch will fail to parse and index the documents.

  2. The vector_query_field in your documents not matching the vector_query_field used in the index mapping. If the field does not exist or if the data type does not match (i.e., it's not a list of floats), Elasticsearch will fail to parse and index the documents.

To resolve this issue:

  1. Ensure that the dims_length argument is correctly set when creating the index. This should match the dimensions of the vectors in your documents.

  2. Ensure that the vector_query_field in your documents matches the vector_query_field used in the index mapping and that it contains a list of floats.

Here's an example of how you can check these:

# Check the dimensions of your vectors
dims_length = len(documents[0].vector)  # replace with your actual vector field

# Check the vector field in your documents
vector_query_field = 'vector'  # replace with your actual vector field

# Create the ElasticsearchStore
store = ElasticsearchStore.from_documents(
    documents,
    embedding=OpenAIEmbeddings(),
    index_name="langchain-demo",
    es_url="http://localhost:9200",
    dims_length=dims_length,
    vector_query_field=vector_query_field
)

Please replace 'vector' with the actual field name in your documents that contains the vector data.

If you continue to experience issues, please provide more information about the structure of your documents and the exact code you're using to create the ElasticsearchStore.

Best, Dosu

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

@dosu-bot

hi this is my code, even if the document only have 2 words like "Madam Speaker" it's raising the same error, so I think the problem is not the document

main.py

import os
from dotenv import load_dotenv
from langchain.vectorstores.elasticsearch import ElasticsearchStore
from langchain.embeddings.openai import OpenAIEmbeddings

from langchain.document_loaders import TextLoader
from langchain.text_splitter import CharacterTextSplitter

load_dotenv()

# GENERATE INDEXING

loader = TextLoader("models/state_of_union.txt")
documents = loader.load()
text_splitter = CharacterTextSplitter(chunk_size=500, chunk_overlap=0)
docs = text_splitter.split_documents(documents)

embeddings = OpenAIEmbeddings()

# Check the vector field in your documents
vector_query_field = 'vector'  # replace with your actual vector field

db = ElasticsearchStore.from_documents(
    docs,
    embeddings,
    es_url="http://localhost:9200",
    index_name="test-basic", 
    es_user=os.environ.get("ELASTIC_USERNAME"),
    es_password=os.environ.get("ELASTIC_PASSWORD"),
    distance_strategy="COSINE",
    # distance_strategy="EUCLIDEAN_DISTANCE",
    # distance_strategy="DOT_PRODUCT",
    strategy=ElasticsearchStore.ApproxRetrievalStrategy(),
    vector_query_field=vector_query_field
)

db.client.indices.refresh(index="test-basic")

query = "What did the president say about Ketanji Brown Jackson"
results = db.similarity_search(query)
print(results)
dosubot[bot] commented 1 year ago

🤖

Hello,

The BulkIndexError with the message failed to parse is usually due to Elasticsearch not being able to parse the document you're trying to index. This could be due to a mismatch between the document structure and the index mapping, or due to a problem with the document itself.

In your case, the error is being raised when trying to add texts to the Elasticsearch index. The LangChain framework provides different strategies for indexing and searching documents in Elasticsearch. These strategies include ApproxRetrievalStrategy, ExactRetrievalStrategy, and SparseRetrievalStrategy. Depending on the strategy used, the document structure and the index mapping may vary. Therefore, ensure that the documents you're trying to index match the requirements of the strategy you're using.

The ElasticsearchStore.from_documents function expects a list of Document objects. Each Document object should contain the following fields:

Here is an example of how a document might look:

{
    "_op_type": "index",
    "_index": "langchain-demo",
    "text": "This is a sample document.",
    "vector": [0.1, 0.2, 0.3, 0.4, 0.5],  # This is optional
    "metadata": {"author": "John Doe", "date": "2022-01-01"},
    "_id": "doc1",
}

Please ensure that your documents match this structure. If you're using a strategy that requires inference, make sure the inference is correctly performed before adding the text to the index.

If you're not using a pipeline, you can remove the default_pipeline setting from the index settings. If you're using a pipeline, make sure it's correctly defined and deployed in your Elasticsearch instance.

I hope this helps! If you have any other questions, feel free to ask.

Best, Dosu

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

@dosu-bot

I found the problem, the problem is from embeddings on libs/langchain/langchain/vectorstores/elasticsearch.py line 822, if I change the condition to false, it's work

my embeding if I print it to console is

client=<class 'openai.api_resources.embedding.Embedding'> model='text-embedding-ada-002' deployment='text-embedding-ada-002' openai_api_version='' openai_api_base='' openai_api_type='' openai_proxy='' embedding_ctx_length=8191 openai_api_key='sk-' openai_organization='' allowed_special=set() disallowed_special='all' chunk_size=1000 max_retries=6 request_timeout=None headers=None tiktoken_model_name=None show_progress_bar=False model_kwargs={}
dosubot[bot] commented 1 year ago

🤖

Hello,

The BulkIndexError with the message failed to parse is likely due to the Elasticsearch index not being able to parse the document you're trying to index. This can happen if the index mapping is not compatible with the document structure or if there's an issue with the document itself.

In your case, the BulkIndexError is being raised when trying to add texts to the ElasticsearchStore object. The error is expected in this case because the index is being created with a non-existing pipeline. The pipeline is a process that Elasticsearch uses to preprocess documents before indexing them. If the pipeline does not exist, Elasticsearch will not be able to process the documents, resulting in a BulkIndexError.

To fix this issue, you should ensure that the pipeline specified in the default_pipeline setting exists in your Elasticsearch instance. If you don't need to preprocess your documents, you can remove the default_pipeline setting from the index creation.

Also, make sure that the structure of your documents matches the index mapping. If your documents contain only text, the mapping should be set to handle text fields. For example:

docsearch.client.indices.create(
    index=index_name,
    mappings={
        "properties": {
            "text": {
                "type": "text"
            }
        }
    },
)

This will create an index that can handle documents with a single text field. If your documents have a different structure, you should adjust the mapping accordingly.

In the LangChain framework, the ElasticsearchStore class provides several methods for creating and managing an Elasticsearch index, including from_texts and add_texts. These methods use the bulk helper function from the elasticsearch package to perform bulk operations on the index. If there's an issue with the documents being indexed, such as a mismatch between the document structure and the index mapping, the bulk function will raise a BulkIndexError. Make sure that the documents you're trying to index match the structure expected by the index mapping.

The structure of the documents being indexed in the LangChain framework is defined by the Document class. Each document has two main attributes:

  1. page_content: This is a string that contains the text of the document.
  2. metadata: This is a dictionary that can contain arbitrary metadata about the page content. For example, it could include the source of the document, relationships to other documents, etc.

I hope this helps! Let me know if you have any other questions.

Sources


This response is meant to be useful and save you time. It is not meant to be a precise solution, but rather a starting point for your own research.

Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant.

If you want to continue the conversation, start your reply with @dosu-bot.

mikysetiawan commented 1 year ago

so the problem is dims size of vector, from elasticsearch documentation https://www.elastic.co/guide/en/elasticsearch/reference/current/dense-vector.html

image

must upgrade to minimum elasticsearch 8.8

joemcelroy commented 1 year ago

Thanks for using Elasticsearch! Will make this more clear that its best used with Elasticsearch 8.8+.

VBoB13 commented 1 year ago

must upgrade to minimum elasticsearch 8.8

Now this is good to know... I just upgraded my LangChain using pip install -U langchain, then the old ElasticVectorSearch object started to throw "Depricated" warnings thus I had to re-write the code. Re-writing the code wasn't difficult, but when it doesn't work the way it did in the past (e.g. simple embeddings that I could do before is not possible).

Now I just gotta upgrade our whole Elasticsearch service 😭

joemcelroy commented 1 year ago

Now I just gotta upgrade our whole Elasticsearch service 😭

Hey @VBoB13 What version of Elasticsearch are you running? It should work fine with 8 +, just some of the features like hybrid search wont be available.

Also to note, ElasticVectorSearch relies on brute force approach to do vector search (via a script calculation). You can enable this via using the ExactRetrievalStrategy. This should behave exactly how ElasticVectorSearch works.

Joe

VBoB13 commented 1 year ago

@joemcelroy I was using version 8.3.3 from this Docker Hub project I had the exact same error as above, so I just assumed that I might have to upgrade Elasticsearch to make it all work.

I proceeded to upgrade to version 8.9.1 (which should be the latest version as of now) and new indices now work as expected. Due to the changes made in how the ElasticsearchStore works (compared to the old ElasticVectorStore), it does not allow me to use the old indices to search through, thus I will have to recreate all the old indices..

joemcelroy commented 1 year ago

Yes ElasticVectorStore used brute force approach so you should be able to search on the old indices with setting the brute force strategy (tho may need to tweak the vector and text fields aswell)

Approx (which is what ElasticsearchStore uses) uses the HNSW algorithm to search which scales better when you have a large number of vectors. Its why its our preferred default now.

VBoB13 commented 1 year ago

I can confirm that it now works as intended 😄

w5688414 commented 3 months ago

Thanks, I use this command, it works:

sudo docker run \
      -d \
      --name es02 \
      --net elastic \
      -p 9200:9200 \
      -e discovery.type=single-node \
      -e ES_JAVA_OPTS="-Xms512m -Xmx512m"\
      -e xpack.security.enabled=false \
      -e cluster.routing.allocation.disk.threshold_enabled=false \
      -it \
      docker.elastic.co/elasticsearch/elasticsearch:8.9.1