langchain-ai / langchainjs

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Trying to create a basic PDFLoader in Deno fails with #4386

Open mcgear opened 7 months ago

mcgear commented 7 months ago

I am trying to use PDFLoader from a test in DenoJS, to start getting a feel for it, but am stuck almos immediately.

Getting the following error when running the test

C:\Users\micha_8ygdgy8\Fathym\OpenSource\fathym-deno\everything-as-code>deno task test
Task test deno test -A --unstable-kv --allow-env .env tests/tests.ts --coverage=cov
Check file:///C:/Users/micha_8ygdgy8/Fathym/OpenSource/fathym-deno/everything-as-code/tests/tests.ts
error: Uncaught Error: Unable to load C:\Users\micha_8ygdgy8\AppData\Local\deno\npm\registry.npmjs.org\langchain\0.1.17\src\types\pdf-parse.d.ts: The system cannot find the path specified. (os error 3)
    at Object.getSourceFile (ext:deno_tsc/99_main_compiler.js:575:28)
    at findSourceFileWorker (ext:deno_tsc/00_typescript.js:121195:25)
    at findSourceFile (ext:deno_tsc/00_typescript.js:121115:22)
    at ext:deno_tsc/00_typescript.js:121064:24
    at getSourceFileFromReferenceWorker (ext:deno_tsc/00_typescript.js:121033:28)
    at processSourceFile (ext:deno_tsc/00_typescript.js:121062:7)
    at ext:deno_tsc/00_typescript.js:121334:9
    at forEach (ext:deno_tsc/00_typescript.js:55:24)
    at processReferencedFiles (ext:deno_tsc/00_typescript.js:121333:7)
    at findSourceFileWorker (ext:deno_tsc/00_typescript.js:121244:11)

Test is here: https://github.com/fathym-deno/everything-as-code/blob/feature/thinky/tests/workshop/bench.ts

Dependencies defined here: https://github.com/fathym-deno/everything-as-code/blob/feature/thinky/tests/test.deps.ts

Trying to import pdf-parse instead of npm install (it fails even if i run npm install pdf-parse): import "npm:pdf-parse";

How can i get this working in deno?

dosubot[bot] commented 7 months ago

🤖

The error you're encountering is likely due to the fact that Deno does not support Node.js built-in modules like 'fs', 'path', and 'url'. Deno has its own set of standard libraries and does not use Node.js's 'require' system.

To resolve this issue, you should use Deno's built-in functions to replace the Node.js modules. Here's how you can modify your code:

import { test, expect } from "@jest/globals";
import { PDFLoader } from "../fs/pdf.js";
import { readFileSync } from "https://deno.land/std/fs/mod.ts";
import { resolve, dirname } from "https://deno.land/std/path/mod.ts";
import { fromFileUrl } from "https://deno.land/std/path/mod.ts";

test("Test PDF loader from blob", async () => {
  const filePath = resolve(
    dirname(fromFileUrl(import.meta.url)),
    "./example_data/1706.03762.pdf"
  );
  const loader = new PDFLoader(
    new Blob([readFileSync(filePath)], {
      type: "application/pdf",
    })
  );
  const docs = await loader.load();

  expect(docs.length).toBe(15);
  expect(docs[0].pageContent).toContain("Attention Is All You Need");
  expect(docs[0].metadata).toMatchInlineSnapshot(`
    {
      "blobType": "application/pdf",
      "loc": {
        "pageNumber": 1,
      },
      "pdf": {
        "info": {
          "Author": "",
          "CreationDate": "D:20171207010315Z",
          "Creator": "LaTeX with hyperref package",
          "IsAcroFormPresent": false,
          "IsXFAPresent": false,
          "Keywords": "",
          "ModDate": "D:20171207010315Z",
          "PDFFormatVersion": "1.5",
          "Producer": "pdfTeX-1.40.17",
          "Subject": "",
          "Title": "",
          "Trapped": {
            "name": "False",
          },
        },
        "metadata": null,
        "totalPages": 15,
        "version": "1.10.100",
      },
      "source": "blob",
    }
  `);
});

In this code, I've replaced the Node.js 'fs', 'path', and 'url' modules with equivalent functions from Deno's standard library. The 'readFileSync' function is used instead of 'fs.readFile', and 'resolve' and 'dirname' functions are used instead of 'path.resolve' and 'path.dirname'. The 'fromFileUrl' function is used to convert the URL to a file path.

You can find more information about this in the langchain/src/document_loaders/tests/pdf-blob.test.ts file in the langchainjs repository.

As for your question about whether the langchainjs framework supports DenoJS, it does. The evidence for this is in the provided context, specifically in the deno.json file. This file is used to map imports in Deno, and it includes several langchain modules, such as "@langchain/community/", "@langchain/openai", "@langchain/core/", and "@langchain/pinecone". This indicates that these modules can be imported and used in a Deno environment. You can find more information about this in the deno.json file in the langchainjs repository.

Sources

#### About Dosu This response is meant to be useful and save you time. It is **not meant to be a precise solution**, but rather a starting point for your own research. Help me be more useful! Please leave a 👍 if this is helpful and 👎 if it is irrelevant. If you want to continue the conversation, start your reply with @dosu-bot.
jacoblee93 commented 7 months ago

I had success in a Deno notebook like this:

// Peer dependency
import * as parse from "pdf-parse";
import { PDFLoader } from "langchain/document_loaders/fs/pdf";

const loader = new PDFLoader("./static/docs/MachineLearning-Lecture01.pdf");

const rawCS229Docs = await loader.load();

https://github.com/jacoblee93/dlai-langchainjs/blob/main/02_loading_and_preparing_data.ipynb

Where my import map in deno.json looked like this:

https://github.com/jacoblee93/dlai-langchainjs/blob/main/deno.json

Could you try that exact syntax and let me know?

mcgear commented 7 months ago

I tried that "exact" code... The only difference i think is that the PDFLoader is used within a test (not sure if maybe that is the issue?). But i really need it working in a test first.

I am on Deno version: Deno 1.40.4

I updated my commits so that my code is reflected in the repos i provided: https://github.com/fathym-deno/everything-as-code/blob/feature/thinky/deno.jsonc https://github.com/fathym-deno/everything-as-code/blob/feature/thinky/tests/workshop/bench.ts

mcgear commented 7 months ago

I did try something with a direct call, outside of a test, and i get an error about not finding the file... so that is promising as it does get past the issue with not resolving pdf-parse https://github.com/fathym-deno/everything-as-code/blob/feature/thinky/tests/workshop/bench-direct.ts

mcgear commented 7 months ago

Just pushed a fix to bench direct, and it does work outside of the deno test

mcgear commented 7 months ago

deno run -A ./tests/workshop/bench-direct.ts

mcgear commented 7 months ago

Working to bring the communities together, i added a bug in deno for this as well: https://github.com/denoland/deno/issues/22399

jacoblee93 commented 7 months ago

Thank you for diving in here! Will keep an eye on that issue.

mcgear commented 7 months ago

Thank you for the help. I'll see if the code you provided works from a Deno fresh api tomorrow, at least then i can move forward, and if it doesn't work there, then we'll have some more knowledge to go by.

mcgear commented 7 months ago

I wanted to provide a little more information as we work through this. I wanted to try and remove the importMaps for deno, in order to be able to follow the needs for a library and was able to trim down the code so that there were no import maps and just the following:

import * as parse from "npm:pdf-parse";
import { PDFLoader } from "npm:langchain/document_loaders/fs/pdf";

const loader = new PDFLoader("./training/azure/data-explorer/azure-data-explorer.pdf", {
  splitPages: false,
});

const docs = await loader.load();

console.log(docs);

That seems to work just fine when run as a deno run command, but not in a test. Just trying to help us remove some variables from the possible issue. The same within a test fails:

import * as parse from "npm:pdf-parse";
import { PDFLoader } from "npm:langchain/document_loaders/fs/pdf";

Deno.test('Workshop Bench', async (t) => {
  await t.step('Retrieval Test', async () => {
    const loader = new PDFLoader("./training/azure/data-explorer/azure-data-explorer.pdf", {
      splitPages: false,
    });

    const docs = await loader.load();

    console.log(docs);
  });
});

I did try to move the test code out of a step and into the root test, and that still failed.

In the end, we don't need the extra import maps to get it working, clearly something to do with the context of running it within Deno.test.

dosubot[bot] commented 4 months ago

Hi, @mcgear,

I'm helping the langchainjs team manage their backlog and am marking this issue as stale. From what I understand, you encountered an error when trying to use PDFLoader in a DenoJS test, and after receiving detailed responses and suggestions from dosubot and jacoblee93, you continued to experiment with different code configurations to troubleshoot the issue. The issue has been resolved with my explanation that Deno does not support Node.js built-in modules and suggested using Deno's standard library functions instead. Additionally, jacoblee93 provided a successful code snippet using PDFLoader in a Deno notebook.

Could you please confirm if this issue is still relevant to the latest version of the langchainjs repository? If it is, please let the langchainjs team know by commenting on the issue. Otherwise, feel free to close the issue yourself, or it will be automatically closed in 7 days. Thank you!

mcgear commented 1 week ago

Sorry for letting this go stale, but i finally got back into some more RAG stuff that i am trying to test... And can confirm that i am still getting this issue.

jacoblee93 commented 1 week ago

Sorry yeah still need to have a look at this!