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No YAML Workflows #493

Open jtronge opened 1 year ago

jtronge commented 1 year ago

BEE used to support running workflows that didn't include a yaml file. We still have a number of examples that are like this and they don't work with the current BEE. Specifically bee_client requires the yaml file now.

Should we fix this so that BEE supports these types of workflows? Or maybe we should just convert the old examples to use yaml files. I'm not sure if this is really something that's a standard part of CWL.

pagrubel commented 1 year ago

Good question, I'm thinking those workflows are really old and we can just require a yaml file. If this is the case we can delete those examples and make sure any that are important are modified and others can be deleted. Then close this issue.