Modified the function used to copy the source location files to the working space for pavilion to instead generate symlinks to the files in the source location in the same directory tree structure.
Also, cleaned up files that are different between this branch and master to not have commented out code.
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Modified the function used to copy the source location files to the working space for pavilion to instead generate symlinks to the files in the source location in the same directory tree structure.
Also, cleaned up files that are different between this branch and master to not have commented out code.