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lanl / PyBNF

An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.
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Bootstrap fix #203

Closed emitra17 closed 6 years ago

emitra17 commented 6 years ago

Fix error with bootstrapping with sum of squares objective. Closes #198

Need to confirm that this actually fixes things.

emitra17 commented 6 years ago

SumOfSquaresObjective was missing the multiplication by exp_data.weights[exp_row, exp_data.cols[col_name]]. I moved this factor to the superclass, so it affects all SummationObjectives.

ryants commented 6 years ago

Took me a bit to regain my bearings, but it looks good to me