FDR collection tool retrieving documents as `txt` format

[keighrim]

Files retrieved by FDR "create collection" tool are marked as txt, although the tool config is explicitly specifying the format to be lif . Maybe the tool is creating files with .txt extension and then galaxy is trying to find files and dynamically mark them using their extension?

[ksuderman]

it turns out it is the LSD wrapper that is using a .txt extension. Interesting the file extension supersedes the format specified in the XML config.

[keighrim]

closed via #13