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lappsgrid-incubator / GalaxyMods

The LAPPS Grid modifications to core Galaxy.
Apache License 2.0
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Error when running Semantic Tagger #15

Closed nancyide closed 5 years ago

nancyide commented 5 years ago

Exception in thread "main" java.lang.NoClassDefFoundError: semtagger$_process_closure1 at semtagger.process(semtagger.groovy:36) at semtagger$process.callCurrent(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:51) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:156) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:176) at semtagger.run(semtagger.groovy:26) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:104) at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:326) at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1235) at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041) at org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:1011) at org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:994) at org.codehaus.groovy.runtime.InvokerHelper.runScript(InvokerHelper.java:423) at org.codehaus.groovy.runtime.InvokerHelper$runScript.call(Unknown Source) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:135) at semtagger.main(semtagger.groovy) Caused by: java.lang.ClassNotFoundException: semtagger$_process_closure1 at java.net.URLClassLoader.findClass(URLClassLoader.java:382) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 22 more

ksuderman commented 5 years ago

What document were you using?

nancyide commented 5 years ago

Pasted data.

On Feb 6, 2019, at 4:01 PM, Keith Suderman notifications@github.com wrote:

What document were you using?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/lappsgrid-incubator/GalaxyMods/issues/15#issuecomment-461185735, or mute the thread https://github.com/notifications/unsubscribe-auth/AD7Nv-90pZebLHy34gV7e6-keKEJm8YQks5vK0KbgaJpZM4amEzt.

ksuderman commented 5 years ago

This bug is in the LSD wrapper that is no longer being used.