Installation fails

[iferres]

Hi, I got the following when installing micropan: `> devtools::install_github('larssnip/micropan') Downloading GitHub repo larssnip/micropan@master from URL https://api.github.com/repos/larssnip/micropan/zipball/master Installing micropan '/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL \ '/tmp/RtmpEARWw2/devtools4815197462c8/larssnip-micropan-90d063a' \ --library='/home/user/R/x86_64-redhat-linux-gnu-library/3.3' --install-tests

• installing source package ‘micropan’ ... ** libs g++ -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o micropan.so ORF_index.o RcppExports.o extractORF.o -L/usr/lib64/R/lib -lR ORF_index.o: file not recognized: File format is ambiguous ORF_index.o: matching formats: coff-x86-64 pe-x86-64 collect2: error: ld returned 1 exit status /usr/share/R/make/shlib.mk:6: recipe for target 'micropan.so' failed make: *** [micropan.so] Error 1 ERROR: compilation failed for package ‘micropan’
• removing ‘/home/user/R/x86_64-redhat-linux-gnu-library/3.3/micropan’ Installation failed: Command failed (1)`

Any idea on what's going on? I got a very similar message in a different computer. Thanks!

[khliland]

Hi iferres. The repository is not fully cleaned from extra local compilation files, which I suspect is the source of this error. I would recommend installing from CRAN instead for the time being. We will make sure to clean this up with coming updates. Best regards, khliland

[iferres]

Thanks Khliland, I tried using the CRAN version first but I notice that there's a bug on the hmmerScan() function, which you have already corrected on this repo. That's why I was trying to install this one. At the end I use the corrected version of the function (the one here) with the other functions available on the CRAN version of the package. Thanks for your time. Bests, Ignacio