Hi,
I am using distJaccard function and I am wondering about the interpretation of the results.
my input was an accessory genome presence/absence matrix (attached), where each row is one genome and the columns are the genes. 1 means presence/ 0 absence.
My output was the following (just part of it, I did not copy the entire one)
"","Var1","Freq"
"1","A",0.512974051896208
"2","B",0.423711340206186
"3","C",0.423860329776916
"4","D",0.493881118881119
"5","E",0.687943262411348
I wonder how could I know exactly for each genome pair is the result.
Hi, I am using distJaccard function and I am wondering about the interpretation of the results.
my input was an accessory genome presence/absence matrix (attached), where each row is one genome and the columns are the genes. 1 means presence/ 0 absence.
My output was the following (just part of it, I did not copy the entire one) "","Var1","Freq" "1","A",0.512974051896208 "2","B",0.423711340206186 "3","C",0.423860329776916 "4","D",0.493881118881119 "5","E",0.687943262411348
I wonder how could I know exactly for each genome pair is the result.
Thanks ST131_acc_genome.csv