lasigeBioTM / MER

Minimal Named-Entity Recognizer (MER)
http://labs.fc.ul.pt/mer/
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Matching term not existent in gazeeter #32

Open LLCampos opened 7 years ago

LLCampos commented 7 years ago

When doing

bash get_entities.sh 1 T "sera Ser-," ChEBI

We get:

1   T   0   4   0.278652    sera    ChEBI   1
1   T   5   9   0.278652    Ser-    ChEBI   1

But sera does not exist on the ChEBI data files. So this does not return anything.

bash get_entities.sh 1 T "sera" ChEBI

And curiously, this happens:

bash get_entities.sh 1 T "sera Ser-" ChEBI
1   T   5   8   0.0897608   Ser ChEBI   1

So is something related to the comma.

The first command shown in this issue should return:

1   T   5   9   0.278652    Ser-    ChEBI   1

Because ser- is a ChEBI term.