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lasopablo / freesurfer-freesurfer-dev-mri_WMHsynthseg

Project at Harvard (HMS and MGH) for Deep Learning-powered WMH quantification. Please refer to the official website for more recent information.
https://surfer.nmr.mgh.harvard.edu/fswiki/WMH-SynthSeg
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Request Docker version the freesurfer dev #1

Open zhaoliang0302 opened 9 months ago

zhaoliang0302 commented 9 months ago

I am currently working on a project that involves utilizing the mri_WMHsynthseg function from FreeSurfer's development version. While attempting to install and run the dev version, I encountered errors that seem to be related to the environment configuration. Unfortunately, my limited experience with Ubuntu has hindered my ability to troubleshoot and proceed with my data analysis. I was wondering if it would be possible for providing a Docker version of the latest development release. Having a Docker container would greatly assist me in overcoming the challenges I am facing with the installation and running of the dev version. Your assistance with this matter would be immensely valuable to my project.

Best regards, Liang

lasopablo commented 8 months ago

Dear Liang,

Thank you for your suggestion about creating a Docker container for the development version of FreeSurfer's mri_WMHsynthseg function. We think it's a great idea and plan to work on it. This should help simplify the setup process and resolve the environment configuration issues you've been facing.

We'll keep you updated -and thanks for your feedback!

Best regards, Pablo