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lassoan / SlicerTotalSegmentator

Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
Apache License 2.0
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Missing items from TotalSegmentator v2 mapping #42

Closed lassoan closed 1 year ago

lassoan commented 1 year ago

These labels are missing from the mapping csv file:

lassoan commented 1 year ago

@fedorov The TotalSegmentator v2 mapping is almost complete, just two labels are missed (see above). Could you add their mapping to the .csv file? Thank you! If it is done then it could make sense to submit the .csv to the TotalSegmentator repository, too.

fedorov commented 1 year ago

If it is done then it could make sense to submit the .csv to the TotalSegmentator repository, too.

I agree. I will do it once it is updated here first.

fedorov commented 1 year ago

@lassoan can you please let me know what are the label numbers for those 2 missing labels, and where they are located in TotalSegmentator repo? I tried and failed in looking for those.

lassoan commented 1 year ago

I don't think there are fixed label values (each task uses different label values). You can find find S1 here: https://github.com/wasserth/TotalSegmentator/blob/cad2230bc2756c555b13afa5282019d1c87b7a5a/totalsegmentator/map_to_binary.py#L138 the other one is in the same file.

We can probably remove the label numbers from the .csv but you can ask Jakob to confirm.