RNASeq STAR alignment rates

[laurahspencer]

@ggoetznoaa can you add STAR output summary files to the /results/STAR/ directory? Looking for alignment rates by sample.

[ggoetznoaa]

@laurahspencer I've uploaded the STAR log files for each sample to the /results/STAR folder. This contains the output summary information for each sample.

[laurahspencer]

Sample	% uniquely aligned
CH07-04	40.80%
CH09-28	37.01%
CH05-07	35.98%
CH01-14	32.41%
CH07-06	32.21%
CH07-11	30.48%
CH05-14	29.59%
CH05-29	28.19%
CH01-22	28.14%
CH03-33	27.52%
CH07-24	26.34%
CH01-06	25.38%
CH05-09	24.63%
CH10-11	24.58%
CH03-04	24.58%
CH10-08	24.44%
CH01-38	24.06%
CH07-08	23.94%
CH05-01	23.17%
CH05-06	21.78%
CH09-02	18.72%
CH09-13	17.62%
CH03-15	17.55%
CH05-21	14.11%

[laurahspencer]

RNASeq alignment rates don't match up with the % reads mapping to arthropoda (i.e. MEGAN results, see #26)

[kristamnichols]

@laurahspencer a scatterplot of %alignment vs. % reads arthropoda might be a good visualization if someone hasn't already done this?

[laurahspencer]