Closed laurahspencer closed 10 months ago
Complete! Results are here: https://github.com/laurahspencer/DuMOAR/tree/main/results/salmon/all.original_vs_megan6_assembly
See alignment rates by sample in the "Salmon Mapping" tab of this spreadsheet: https://docs.google.com/spreadsheets/d/16m-eGXqCJyl7LET2-P1hx4A5UW2YJeaK1UbswEqL1ls/edit#gid=1978455969
NEW APPROACH given that the de-novo transcriptome built from MEGAN-scrubbed reads might be pretty good, as per BUSCO results (~92% complete):
@ggoetznoaa use Salmon to map ALL RNASeq reads to the trinity de-novo transcriptome built from MEGAN-scrubbed reads.