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lawremi / ggbio

Grid and ggplot2 based visualization for biological data
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Cannot be built with R 3.6.0 #117

Closed rekado closed 5 years ago

rekado commented 5 years ago

When building version 1.30.0 with R 3.6.0 this happens:

* installing *source* package ‘ggbio’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
From .checkSubclasses(): subclass "GeneNameFilter" of class "AnnotationFilter" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x40f3718>, where2=<environment: namespace:ggbio>]
From .checkSubclasses(): subclass "GeneNameFilter" of class "AnnotationFilter" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x40f3718>, where2=<environment: namespace:ggbio>]
Creating a new generic function for 'rescale' in package 'ggbio'
Creating a new generic function for 'xlim' in package 'ggbio'
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses,  : 
  The prototype for class "GGbio" has undefined slot(s): 'fechable'
Error: unable to load R code in package 'ggbio'
Execution halted
ERROR: lazy loading failed for package ‘ggbio’
* removing ‘/gnu/store/d5kp9g3zn8f9w5skirr8j4lnlqv4rima-r-ggbio-1.30.0/site-library/ggbio’
rekado commented 5 years ago

My bad, looks like this was fixed with commit b04a9840cf5c0bd0514db2536f2e610bbd364727, but that's not included in the current release on Bioconductor.