search

lawremi / ggbio

Grid and ggplot2 based visualization for biological data
111 stars 24 forks source link

stat="aggregate" could use coverage as default 'y' #16

Open lawremi opened 12 years ago

lawremi commented 12 years ago

Right now, 'y' is a required parameter for stat="aggregate". Why not generate an automatic 'y' using the coverage? This would then be a smoothing of the coverage. Another idea would be to use the 'score' column by default, and then fall back to coverage. Who knows. Just an idea.

tengfei commented 12 years ago

you are right, required "y" is not be a good idea, we need some nice default for it, I will keep this issue open and think about it, maybe use your second idea first, use "score" column first if there is a "score", then use coverage.

On Fri, Apr 13, 2012 at 3:58 PM, lawremi < reply@reply.github.com

wrote:

Right now, 'y' is a required parameter for stat="aggregate". Why not generate an automatic 'y' using the coverage? This would then be a smoothing of the coverage. Another idea would be to use the 'score' column by default, and then fall back to coverage. Who knows. Just an idea.

Reply to this email directly or view it on GitHub: https://github.com/tengfei/ggbio/issues/16

Tengfei Yin MCDB PhD student 1620 Howe Hall, 2274, Iowa State University Ames, IA,50011-2274 Homepage: www.tengfei.name