Open Rohit-Satyam opened 1 year ago
I'm curious about the rationale for converting to Rmd. I couldn't find any on the Sweave2Rmd github page. Regardless, please be my guest. I'm not very familiar with Rmd, but I don't remember Sweave/Latex anymore either, so it's all the same ;)
Hi, you can know more about Sweave2Rmd project here: https://bioconductor.github.io/sweave2rmd/index.html
As maybe a future user of your package can I test and update the vignette with hg38
, new EnsDb.Hsapiens.v86
and TxDb.Hsapiens.UCSC.hg38.knownGene
instead of hg19
and EnsDb.Hsapiens.v75
and TxDb.Hsapiens.UCSC.hg19.knownGene
.
That's fine with me. As I said though, that page does not explain why you are doing this. I'm just curious, and I think it would be generally worth while for your effort to communicate its motivations.
Hi @lawremi
Here is the rationale: https://docs.google.com/presentation/d/11PX1CWperCET_oDMM43KSTIhwsuTtuqAO1kgY7Pq96w/edit#slide=id.g168379e359d_0_5
Hi, I'm volunteering with Sweave2Rmd and we're trying to convert all Bioconductor Sweave vignettes into Rmd files. Would you be willing to accept a pull request converting "ggbio: visualization toolkits for genomic data" for the "ggbio package" from one of our volunteers? We'll take care of converting the file. We'll ask you to review and accept the pull request. You'll also need to bump the version number in your DESCRIPTION file so that the build machines will recognize that a new version is available.
Thanks for your time.