I am happy to see there is a demonstration of usage to get the RepeatMakser track in rtracklayer, since I am very interested in this field. I just found an unknown track error. Please consider accepting this change in the tutorial. Thanks a lot!
Details:
This function demonstration wants to get the RepeatMasker table from UCSC. Thus, the track needs to be RepeatMasker instead of rmsk. Otherwise, it will get an unknown track error in R:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'getTable': error in evaluating the argument 'table' in selecting a method for function '%in%': Unknown track: rmsk
I am happy to see there is a demonstration of usage to get the RepeatMakser track in rtracklayer, since I am very interested in this field. I just found an unknown track error. Please consider accepting this change in the tutorial. Thanks a lot!
Details: This function demonstration wants to get the RepeatMasker table from UCSC. Thus, the track needs to be RepeatMasker instead of rmsk. Otherwise, it will get an unknown track error in R:
Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'getTable': error in evaluating the argument 'table' in selecting a method for function '%in%': Unknown track: rmsk