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lawremi / rtracklayer

R interface to genome annotation files and the UCSC genome browser
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Backport fix: don't import path from Rsamtools #11

Closed scottgigante closed 6 years ago

scottgigante commented 6 years ago

Rsamtools stopped exporting path at version 1.25.2, and their Bioc 3.6 release is now at 1.30. At present rtracklayer appears to be broken when installing from bioconda due to the combination of this issue, and the unavailability of older versions of Rsamtools.

lawremi commented 6 years ago

Rsamtools exported path() through exportPattern("^[^\\.]") up until it was moved during the development cycle for Bioc 3.7. The Bioc build system ensures that all the packages work together, so there is probably something else wrong.

scottgigante commented 6 years ago

Oh, I see. Odd - installing from my fork fixed the issue nonetheless. Thanks for clarifying!