Failing on Bioc devel - Githubissues

Thank you so much for responding.

I tried in both R4.4 and devel. Same issue.

Any clue how to solve?

Thank you!

install.packages("C:/Users/afais/Downloads/rtracklayer_1.63.2.tar.gz", repos = NULL, type = "source") Installing package into ‘C:/Users/afais/AppData/Local/R/win-library/4.5’ (as ‘lib’ is unspecified)

installing source package 'rtracklayer' ... ** using staged installation

WARNING: this package has a configure script It probably needs manual configuration

* libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c XVector_stubs.c -o XVector_stubs.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_rtracklayer.c -o R_init_rtracklayer.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c readGFF.c -o readGFF.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bbiHelper.c -o bbiHelper.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bigWig.c -o bigWig.o bigWig.c: In function 'BWGFile_query': bigWig.c:268:11: warning: 'ans_nhits' may be used uninitialized [-Wmaybe-uninitialized] 268 | INTEGER(ans_nhits)[i] = nqhits; | ^~~~~~ bigWig.c:231:58: note: 'ans_nhits' was declared here 231 | SEXP ans, ans_start, ans_width, ans_score, ans_ranges, ans_nhits; | ^~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bigBedHelper.c -o bigBedHelper.o bigBedHelper.c: In function 'bbNamedFileChunkKey': bigBedHelper.c:148:3: warning: 'strncpy' destination unchanged after copying no bytes [-Wstringop-truncation] 148 | strncpy(keyBuf,item->name, maxBedNameSize); | ^~~~~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bigBed.c -o bigBed.o bigBed.c: In function 'BBDFile_write': bigBed.c:338:10: warning: variable 'extraIndexListEndOffset' set but not used [-Wunused-but-set-variable] 338 | bits64 extraIndexListEndOffset = 0; | ^~~~~~~ bigBed.c: In function 'BBDFile_query': bigBed.c:195:7: warning: 'name' may be used uninitialized [-Wmaybe-uninitialized] 195 | SET_STRING_ELT(name, i, mkChar(bed->name)); | ^~~~~~~~~~ bigBed.c:74:54: note: 'name' was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~ bigBed.c:198:7: warning: 'score' may be used uninitialized [-Wmaybe-uninitialized] 198 | INTEGER(score)[i] = bed->score; | ^~~~~~ bigBed.c:74:60: note: 'score' was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~~ bigBed.c:205:7: warning: 'thickStart' may be used uninitialized [-Wmaybe-uninitialized] 205 | INTEGER(thickStart)[i] = bed->thickStart; | ^~~~~~~ bigBed.c:75:26: note: 'thickStart' was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~ bigBed.c:204:7: warning: 'thickWidth' may be used uninitialized [-Wmaybe-uninitialized] 204 | INTEGER(thickWidth)[i] = bed->thickEnd - bed->thickStart + 1; | ^~~~~~~ bigBed.c:75:38: note: 'thickWidth' was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~ bigBed.c:209:7: warning: 'itemRgb' may be used uninitialized [-Wmaybe-uninitialized] 209 | SET_STRING_ELT(itemRgb, i, mkChar(rgbBuf)); | ^~~~~~~~~~ bigBed.c:75:50: note: 'itemRgb' was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~ bigBed.c:218:7: warning: 'blocks' may be used uninitialized [-Wmaybe-uninitialized] 218 | SET_VECTOR_ELT(blocks, i, new_IRanges("IRanges", bstart, bwidth, R_NilValue)); | ^~~~~~~~~~~~~~~~~ bigBed.c:75:59: note: 'blocks' was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~ bigBed.c:236:13: warning: 'lengthIndex' may be used uninitialized [-Wmaybe-uninitialized] 236 | INTEGER(lengthIndex)[efIndex] = index + 1; | ^~~~~~~~ bigBed.c:76:31: note: 'lengthIndex' was declared here 76 | extraFields = R_NilValue, lengthIndex; | ^~~ bigBed.c:226:22: warning: 'typeId' may be used uninitialized [-Wmaybe-uninitialized] 226 | switch(typeId[efIndex]) { | ^ bigBed.c:141:13: note: 'typeId' was declared here 141 | SEXPTYPE typeId; | ^~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chain_io.c -o chain_io.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c twoBit.c -o twoBit.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c handlers.c -o handlers.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/memgfx.c -o ucsc/memgfx.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/binRange.c -o ucsc/binRange.o ucsc/binRange.c:49:12: warning: 'binFromRangeExtended' defined but not used [-Wunused-function] 49 | static int binFromRangeExtended(int start, int end) | ^~~~~~~~ ucsc/binRange.c:28:12: warning: 'binFromRangeStandard' defined but not used [-Wunused-function] 28 | static int binFromRangeStandard(int start, int end) | ^~~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/htmlColor.c -o ucsc/htmlColor.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/sqlList.c -o ucsc/sqlList.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/tokenizer.c -o ucsc/tokenizer.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/asParse.c -o ucsc/asParse.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/basicBed.c -o ucsc/basicBed.o ucsc/basicBed.c: In function 'bedParseRgb': ucsc/basicBed.c:449:1: warning: 'strncpy' specified bound 64 equals destination size [-Wstringop-truncation] 449 | strncpy(dupe, itemRgb, sizeof(dupe)); | ^~~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bigBed.c -o ucsc/bigBed.o ucsc/bigBed.c:326:31: warning: 'bigBedIntervalsMatchingName' defined but not used [-Wunused-function] 326 | static struct bigBedInterval bigBedIntervalsMatchingName(struct bbiFile bbi, | ^~~~~~~ ucsc/bigBed.c:311:16: warning: 'bbWordIsInHash' defined but not used [-Wunused-function] 311 | static boolean bbWordIsInHash(char line, int fieldIx, void target) | ^~~~~~ ucsc/bigBed.c:301:16: warning: 'bbWordMatchesName' defined but not used [-Wunused-function] 301 | static boolean bbWordMatchesName(char line, int fieldIx, void target) | ^~~~~ ucsc/bigBed.c:252:31: warning: 'bigBedChunksMatchingNames' defined but not used [-Wunused-function] 252 | static struct fileOffsetSize bigBedChunksMatchingNames(struct bbiFile bbi, | ^~~~~~~~~ ucsc/bigBed.c:241:31: warning: 'bigBedChunksMatchingName' defined but not used [-Wunused-function] 241 | static struct fileOffsetSize bigBedChunksMatchingName(struct bbiFile bbi, | ^~~~~~~~ ucsc/bigBed.c:150:28: warning: 'bigBedCoverageIntervals' defined but not used [-Wunused-function] 150 | static struct bbiInterval bigBedCoverageIntervals(struct bbiFile bbi, | ^~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bbiRead.c -o ucsc/bbiRead.o ucsc/bbiRead.c: In function 'bbiSummaryArrayExtended': ucsc/bbiRead.c:588:1: warning: implicit declaration of function 'bzero' [-Wimplicit-function-declaration] 588 | bzero(summary, summarySize sizeof(summary[0])); | ^~~~~ ucsc/bbiRead.c:588:1: warning: incompatible implicit declaration of built-in function 'bzero' [-Wbuiltin-declaration-mismatch] gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o ucsc/bwgQuery.c: In function 'bigWigIntervalQuery': ucsc/bwgQuery.c:164:25: warning: variable 'blockEnd' set but not used [-Wunused-but-set-variable] 164 | char blockPt, blockEnd; | ^~~~ ucsc/bwgQuery.c: At top level: ucsc/bwgQuery.c:47:12: warning: 'bigWigBlockDumpIntersectingRange' defined but not used [-Wunused-function] 47 | static int bigWigBlockDumpIntersectingRange(boolean isSwapped, char blockPt, char blockEnd, | ^~~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/cirTree.c -o ucsc/cirTree.o ucsc/cirTree.c:530:13: warning: 'rEnumerateBlocks' defined but not used [-Wunused-function] 530 | static void rEnumerateBlocks(struct cirTreeFile crt, int level, bits64 indexFileOffset, | ^~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/common.c -o ucsc/common.o ucsc/common.c:1901:14: warning: 'emptyStr' defined but not used [-Wunused-variable] 1901 | static char emptyStr = ""; | ^~~~ ucsc/common.c:1900:14: warning: 'naStr' defined but not used [-Wunused-variable] 1900 | static char naStr = "n/a"; | ^~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/dnautil.c -o ucsc/dnautil.o ucsc/dnautil.c:521:12: warning: 'findHeadPolyTMaybeMask' defined but not used [-Wunused-function] 521 | static int findHeadPolyTMaybeMask(DNA dna, int size, boolean doMask, | ^~~~~~ ucsc/dnautil.c:465:12: warning: 'findTailPolyAMaybeMask' defined but not used [-Wunused-function] 465 | static int findTailPolyAMaybeMask(DNA dna, int size, boolean doMask, | ^~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/errAbort.c -o ucsc/errAbort.o ucsc/errAbort.c:218:13: warning: 'warnAbortHandler' defined but not used [-Wunused-function] 218 | static void warnAbortHandler(char format, va_list args) | ^~~~ ucsc/errAbort.c:210:13: warning: 'debugAbort' defined but not used [-Wunused-function] 210 | static void debugAbort() | ^~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/hash.c -o ucsc/hash.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/linefile.c -o ucsc/linefile.o ucsc/linefile.c:92:15: warning: 'headerBytes' defined but not used [-Wunused-function] 92 | static char headerBytes(char *fileName, int numbytes) | ^~~ ucsc/linefile.c:35:15: warning: 'getDecompressor' defined but not used [-Wunused-function] 35 | static char *getDecompressor(char fileName) | ^~~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/localmem.c -o ucsc/localmem.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/zlibFace.c -o ucsc/zlibFace.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/dystring.c -o ucsc/dystring.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/hmmstats.c -o ucsc/hmmstats.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/obscure.c -o ucsc/obscure.o ucsc/obscure.c:14:12: warning: '_dotForUserMod' defined but not used [-Wunused-variable] 14 | static int _dotForUserMod = 100; / How often does dotForUser() output a dot. / | ^~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/rangeTree.c -o ucsc/rangeTree.o ucsc/rangeTree.c:36:14: warning: 'sumInt' defined but not used [-Wunused-function] 36 | static void sumInt(void a, void b) | ^~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/rbTree.c -o ucsc/rbTree.o ucsc/rbTree.c:680:13: warning: 'addRefWithContext' defined but not used [-Wunused-function] 680 | static void addRefWithContext(void item, void context) | ^~~~~ ucsc/rbTree.c:674:13: warning: 'addRef' defined but not used [-Wunused-function] 674 | static void addRef(void item) | ^~ ucsc/rbTree.c:576:13: warning: 'rTreeDump' defined but not used [-Wunused-function] 576 | static void rTreeDump(struct rbTreeNode n) | ^~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/memalloc.c -o ucsc/memalloc.o ucsc/memalloc.c:357:14: warning: 'memTrackerRealloc' defined but not used [-Wunused-function] 357 | static void memTrackerRealloc(void vpt, size_t size) | ^~~~~ ucsc/memalloc.c:348:13: warning: 'memTrackerFree' defined but not used [-Wunused-function] 348 | static void memTrackerFree(void vpt) | ^~~~~~ ucsc/memalloc.c:314:26: warning: 'carefulMemHandler' defined but not used [-Wunused-variable] 314 | static struct memHandler carefulMemHandler = | ^~~~~ ucsc/memalloc.c:220:13: warning: 'carefulMemInit' defined but not used [-Wunused-function] 220 | static void carefulMemInit(size_t maxToAlloc) | ^~~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/dlist.c -o ucsc/dlist.o ucsc/dlist.c:124:12: warning: 'dlNodeCmp' defined but not used [-Wunused-function] 124 | static int dlNodeCmp(const void elem1, const void elem2) | ^~~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/filePath.c -o ucsc/filePath.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/htmlPage.c -o ucsc/htmlPage.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/udc.c -o ucsc/udc.o ucsc/udc.c: In function 'djb2_hash': ucsc/udc.c:1070:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1070 | while (c = str++) | ^ ucsc/udc.c: At top level: ucsc/udc.c:1273:13: warning: 'qDecode' defined but not used [-Wunused-function] 1273 | static void qDecode(const char input, char buf, size_t size) | ^~~ ucsc/udc.c:195:13: warning: 'udcReadAndIgnore' defined but not used [-Wunused-function] 195 | static void udcReadAndIgnore(struct ioStats ioStats, int sd, bits64 size) | ^~~~ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/net.c -o ucsc/net.o ucsc/net.c: In function 'netUrlOpenSockets': ucsc/net.c:155:22: warning: unused variable 'status' [-Wunused-variable] 155 | CURLcode status = wrapped_curl_request(curl, GET); | ^~ ucsc/net.c: In function 'header_get_last_modified': ucsc/net.c:29:1: warning: control reaches end of non-void function [-Wreturn-type] 29 | } | ^ ucsc/net.c: In function 'header_get_content_length': ucsc/net.c:44:1: warning: control reaches end of non-void function [-Wreturn-type] 44 | } | ^ ucsc/net.c: In function 'netUrlOpenSockets': ucsc/net.c:167:1: warning: control reaches end of non-void function [-Wreturn-type] 167 | } | ^ gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/bits.c -o ucsc/bits.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/twoBit.c -o ucsc/twoBit.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/internet.c -o ucsc/internet.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/https.c -o ucsc/https.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/base64.c -o ucsc/base64.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/verbose.c -o ucsc/verbose.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/os.c -o ucsc/os.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -I"C:/Program Files/R/R-devel/library/zlibbioc/include" -I"C:/PROGRA~1/R/R-devel/include" -DNDEBUG -I'C:/Program Files/R/R-devel/library/S4Vectors/include' -I'C:/Program Files/R/R-devel/library/IRanges/include' -I'C:/Program Files/R/R-devel/library/XVector/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -shared -s -static-libgcc -o rtracklayer.dll tmp.def S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -LC:/Program Files/R/R-devel/library/zlibbioc/libs/x64 -lzlib1bioc -lcurl -lssh2 -lssl -lz -lwldap32 -lbcrypt -lcrypto -lgcrypt -lcrypt32 -lgpg-error -lidn2 -lunistring -liconv -lzstd -lws2_32 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA~1/R/R-devel/bin/x64 -lR C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-psl.o):psl.c:(.text+0x31): undefined reference to psl_free' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-psl.o):psl.c:(.text+0xcd): undefined reference topsl_latest' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-psl.o):psl.c:(.text+0x107): undefined reference to psl_free' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-psl.o):psl.c:(.text+0x177): undefined reference topsl_builtin' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-content_encoding.o):content_encodi:(.text+0x222): undefined reference to BrotliDecoderDestroyInstance' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-content_encoding.o):content_encodi:(.text+0x2dc): undefined reference toBrotliDecoderDecompressStream' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-content_encoding.o):content_encodi:(.text+0x339): undefined reference to BrotliDecoderDestroyInstance' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-content_encoding.o):content_encodi:(.text+0x385): undefined reference toBrotliDecoderGetErrorCode' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-content_encoding.o):content_encodi:(.text+0x410): undefined reference to BrotliDecoderCreateInstance' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcurl.a(libcurl_la-cookie.o):cookie.c:(.text+0x1166): undefined reference topsl_is_cookie_domain_acceptable' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcrypto.a(libcrypto-lib-c_zlib.obj):c_zlib.c:(.text+0xabc): undefined reference to uncompress' C:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: C:/rtools44/x86_64-w64-mingw32.static.posix/lib/libcrypto.a(libcrypto-lib-c_zlib.obj):c_zlib.c:(.text+0xb0c): undefined reference tocompress' collect2.exe: error: ld returned 1 exit status no DLL was created ERROR: compilation failed for package 'rtracklayer'

removing 'C:/Users/afais/AppData/Local/R/win-library/4.5/rtracklayer'
restoring previous 'C:/Users/afais/AppData/Local/R/win-library/4.5/rtracklayer' Warning in install.packages : installation of package ‘C:/Users/afais/Downloads/rtracklayer_1.63.2.tar.gz’ had non-zero exit status

R Under development (unstable) (2024-04-14 r86421 ucrt) Platform: x86_64-w64-mingw32/x64 Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8

time zone: America/Sao_Paulo tzcode source: internal

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] compiler_4.5.0 tools_4.5.0

lawremi / rtracklayer

Failing on Bioc devel #82