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layerfMRI
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LAYNII
Stand alone fMRI software suite for layer-fMRI analyses.
BSD 3-Clause "New" or "Revised" License
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Add LayNii to MRHUB
#99
ofgulban
opened
2 weeks ago
0
Applying LN2_LAYERS to other brain measures
#98
torilynnking
opened
1 month ago
1
LN_NOISE_KERNEL: How to estimate anisotropic smoothness from its output?
#97
samtorrisi
opened
2 months ago
4
Make a video showing how to use Freesurfer surfaces together with LN2_LAYERS
#96
ofgulban
opened
7 months ago
1
LN2_LAYERS requires a lot of RAM during with whole brain 0.25 isotropic resolution input
#95
marcobarilari
opened
7 months ago
11
Inquiry about Morphological Characteristics Calculation for Cortical Layers
#94
Changwen-Wu
closed
7 months ago
6
LN_BOCO issue (probably data type issue) with very large fMRI data
#93
zqsha
opened
8 months ago
7
Frontal lobe correction
#92
zqsha
closed
8 months ago
7
Edge case in LN2_PATCH_FLATTEN fills in zeros in the input values
#91
ofgulban
opened
9 months ago
0
Add image derivative programs and their circular versions for phase images
#90
ofgulban
closed
2 months ago
1
LN_LAYER_SMOOTH not detecting layers
#89
joshjcorbett
opened
10 months ago
6
LN2_GRAMAG returning all zeros when 'scl slope' nifti header is 0
#88
ofgulban
closed
10 months ago
1
Add min, max, and median projection parametrized by a window size to LN_INTPRO
#87
ofgulban
opened
11 months ago
2
how to generate the value of cortical depth
#86
alexayue
closed
9 months ago
1
fixed small typos in LN_SKEW
#85
srikash
closed
11 months ago
5
Tutorials for LN2_COLUMNS
#84
zqsha
closed
1 year ago
3
v2.5.1 for Linux, is it missing?
#83
ulloaa
closed
1 year ago
4
Remove noise on the VASO images
#82
zqsha
closed
1 year ago
2
Question about creating EPI reference
#81
zqsha
closed
5 months ago
4
Add LN2_SENSITIVITY and LN2_SPECIFICITY programs
#80
ofgulban
opened
1 year ago
0
dicom to nifti
#79
zqsha
closed
1 year ago
1
Converting Freesurfer segmentation to LayNii rim format required by LN2_LAYERS
#78
SMScottLee
opened
1 year ago
20
Add LN2_RIM_POLISH
#77
ofgulban
closed
1 year ago
3
Add find peak-depth option to UVD_FILTER
#76
sdres
closed
1 year ago
2
Improvements on LN2_MULTILATERATE and LN2_VORONOI
#75
ofgulban
closed
1 year ago
0
Add freesurfer and brainvoyager options to LN2_RIMIFY
#74
ofgulban
opened
1 year ago
2
LN_SKEW errors back with: ** invalid option, '-timeseries'
#73
byronphy
closed
1 year ago
5
Add LN2_NEIGHBOR_MATH
#72
ofgulban
opened
1 year ago
0
Add LN2_PATCH_FLATTEN_2D program
#71
ofgulban
closed
1 year ago
2
Print maximum distance between points in LN2_COLUMNS and LN2_IFPOINTS
#70
ofgulban
closed
1 year ago
1
Add flat to folded space projection program LN2_PATCH_UNFLATTEN
#69
ofgulban
closed
1 year ago
2
Add divergence program LN2_DIVERGENCE
#68
ofgulban
closed
2 months ago
1
Problem running LN2_LAYERS on CentOS 7
#67
Figsandcitrus
closed
1 year ago
4
Add 1st order neighbour finder program LN2_NEIGHBORS
#66
ofgulban
closed
1 year ago
2
Add gradient magnitude computation program LN2_GRAMAG
#65
ofgulban
closed
1 year ago
2
build and push new docker image to docker hub on release
#64
Remi-Gau
closed
1 year ago
6
Performing Layer Analysis on CA1 Hippocampal Subfield
#63
dayanahayek
closed
1 year ago
7
[FIX] fix spelling and typos in comments
#62
Remi-Gau
closed
1 year ago
0
[FIX] fix version number
#61
Remi-Gau
closed
1 year ago
9
The part about docker is not released (yet)
#60
layerfMRI
closed
1 year ago
10
Add 4D input and output capability to LN2_PATCH_FLATTEN
#59
ofgulban
closed
1 year ago
1
A question about the usage of LayNii in Huber et al 2018.
#58
layerConnectome
closed
1 year ago
3
LN2_UVD_FILTER not included in make all
#57
sdres
closed
1 year ago
1
Laynii version number in 'Citation.cff'
#56
27-apizzuti
closed
1 year ago
0
LN2_LAYERS - empty equivol files
#55
ravenep
closed
2 years ago
8
Maximum datasize in LayNii is not clear.
#54
layerfMRI
closed
1 year ago
2
Holes in the middle gray matter file cause problems in LN2_LAYERS and LN2_MULTILATERATE
#53
AtenaAkbari
closed
1 year ago
4
Add -max, -columns options to LN2_UVD_FILTER
#52
27-apizzuti
closed
2 years ago
2
Add Dockerfile (no changes to any source files)
#51
Remi-Gau
closed
2 years ago
2
Column generation problem for LN_COLUMNAR_DIST
#50
yyinghua
closed
2 years ago
6
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