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lazappi / clustree

Visualise Clusterings at Different Resolutions
https://lazappi.github.io/clustree/
GNU General Public License v3.0
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Error for Seurat - gpar' element 'lwd' must not be length 0 #85

Closed PrashINRA closed 1 year ago

PrashINRA commented 1 year ago

Hi, I was successfully running clustree for obtaining clusters at different resolutions from Seurat. Just updated the Seurat, ggplot2, etc. Now it shows error- Error in check.length(gparname) : 'gpar' element 'lwd' must not be length 0.

My code for Seurat object:

Seu<- FindClusters(Seu, resolution = seq(from = 0.1, to = 0.7, by = 0.1)) clust_seurat <- Seu@meta.data %>% dplyr::select(dplyr::contains("RNA_snn_res.")) clustree::clustree(clust_seurat, prefix="RNA_snn_res.")

lazappi commented 1 year ago

This is a duplicated of #82, please check the discussion there.