The X portion of your clustering column names could not be converted to a number. Please check that your prefix and suffix are correct

[denvercal1234GitHub]

Hi there,

Thanks for the package.

I was trying to perform clustree on my sce object, but encountered error above.

Would you mind giving me some advice?

Thank you.

> names(colData(F37_channelCD3CD8_fcs_data_sce_backboneClustering))
 [1] "sample_id"                                                         
 [2] "cell_count_prePeacoQC"                                             
 [3] "cell_count_postPeacoQC"                                            
 [4] "manualInspect_strangeFCS"                                          
 [5] "preFilter_liveCD3CD8_count"                                        
 [6] "flowJo_prePeacoQC_gMFI_PE"                                         
 [7] "flowCore_postPeacoQC_medMFI_PE"                                    
 [8] "cluster_id"                                                        
 [9] "nColID"                                                            
[10] "CATALYST28meta16_nColID"                                           
[11] "CATALYST28meta16_uniqueLetterID"                                   
[12] "ModuleScore_Tonsil_T25_TFHCluster_signif_pos_DEG_inLEGENDBackbone1"
[13] "CD158BnegGZMBneg"                                                  
[14] "CD158BnegGZMBpos"                                                  
[15] "CD158BposGZMBneg"                                                  
[16] "CD158BposGZMBpos"                                                  
[17] "CD158BEZKnegGZMBneg"                                               
[18] "CD158BEZKnegGZMBpos"                                               
[19] "CD158BEZKposGZMBneg"                                               
[20] "CD158BEZKposGZMBpos"                                               
[21] "CD158BGZMB_MeasuredCD158BPE_ID"                                    
[22] "CD158BEZKGZMB_MeasuredCD158BEZKPE_ID"                              
[23] "CATALYST28meta16_cluster_merging_subsetDelinc13c14c15"             
[24] "CATALYST28meta16_subsetDelinc13c14c15_B1"                          
[25] "CATALYST28meta16_subsetDelinc13c14c15_B2"                          
[26] "CATALYST28meta16_subsetDelinc13c14c15_B3"                          
[27] "CATALYST28meta16_subsetDelinc13c14c15_A1"                          
[28] "CATALYST28meta16_subsetDelinc13c14c15_A2"                          
[29] "CATALYST28meta16_subsetDelinc13c14c15_A3"                          
[30] "CATALYST28meta2_clusterID"                                         
[31] "CATALYST28meta3_clusterID"                                         
[32] "CATALYST28meta4_clusterID"                                         
[33] "CATALYST28meta5_clusterID"                                         
[34] "CATALYST28meta6_clusterID"                                         
[35] "CATALYST28meta7_clusterID"                                         
[36] "CATALYST28meta8_clusterID"                                         
[37] "CATALYST28meta9_clusterID"                                         
[38] "CATALYST28meta10_clusterID"                                        
[39] "CATALYST28meta11_clusterID"                                        
[40] "CATALYST28meta12_clusterID"                                        
[41] "CATALYST28meta13_clusterID"                                        
[42] "CATALYST28meta14_clusterID"                                        
[43] "CATALYST28meta15_clusterID"                                        
[44] "CATALYST28meta16_clusterID"                                        
[45] "CATALYST28meta17_clusterID"                                        
[46] "CATALYST28meta18_clusterID"                                        
[47] "CATALYST28meta19_clusterID"                                        
[48] "CATALYST28meta20_clusterID" 

clustree(F37_channelCD3CD8_fcs_data_sce_backboneClustering, prefix = "CATALYST28meta", suffix="_clusterID", layout = "sugiyama", use_core_edges = T, node_label = NULL, node_label_aggr = NULL, exprs = "exprs")

[denvercal1234GitHub]

See #72