lazappi clustree issues

lazappi / clustree

Visualise Clusterings at Different Resolutions

https://lazappi.github.io/clustree/

GNU General Public License v3.0

215 stars 15 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Set lifecycle to mature

#53 lazappi closed 4 years ago
0
Metadata columns not extracted from tibbles

#52 lazappi closed 4 years ago
0
Error: Less than two column names matched the prefix: .res but I have ran a few clusters

#51 klai001 closed 4 years ago
2
clustree_overlay creates missing values (geom_point).

#50 tiagobrc closed 4 years ago
2
sc3_stability yields very low stability indices

#49 Close-your-eyes closed 4 years ago
5
Labelling nodes with size

#48 lazappi closed 4 years ago
2
strange export of clustree

#47 RuixiangLiu01 closed 4 years ago
2
How to pick the best resolution option for Seurat clustering

#46 liu-xingliang closed 4 years ago
2
Customising arrow colour

#45 liz-is closed 4 years ago
2
Axis labels don't match axis value

#44 liz-is closed 4 years ago
5
Gene names containing "-" can't be used for aesthetics

#43 lazappi closed 4 years ago
4
Separate shared code

#42 lazappi opened 4 years ago
0
Edge alpha should have fixed scale on overlay plots

#41 lazappi closed 4 years ago
0
Datasets requiring other packages

#40 lazappi closed 4 years ago
2
Use transparency to add depths to side plots

#39 lazappi opened 4 years ago
1
Side plots break when resolution is rounded

#38 lazappi closed 4 years ago
1
Seurat3 reduced dims

#37 rmenafra closed 4 years ago
7
Error if options(stringsAsFactors = FALSE)

#36 twesleyb closed 5 years ago
3
Adapt to ggplot2 best practices

#35 lazappi opened 5 years ago
2
How to find raw data in the object to plot in_prop

#34 JPingLin closed 5 years ago
2
non-numeric cluster names

#33 igordot closed 5 years ago
5
Missing alpha scale

#32 lazappi closed 4 years ago
0
Node aesthetics using independently computed data for each node

#31 kotliary closed 5 years ago
5
Using pre-existing seurat object.

#30 kasumaz closed 5 years ago
3
Compatibility with Seurat 3.0 release ?

#29 jkanche closed 5 years ago
1
Document SC3 stability index

#28 lazappi closed 5 years ago
0
Add support for Seurat v3

#27 mojaveazure closed 5 years ago
5
Redesign aesthetics interface (possibly tidyeval)

#26 lazappi opened 5 years ago
1
installation error

#25 KoichiHashikawa closed 5 years ago
1
Resolution axis

#24 lazappi closed 5 years ago
0
Two-argument feature and classic clustree labels

#23 BioSok closed 5 years ago
5
Bioconductor support

#22 robertamezquita closed 5 years ago
1
mapping cluster nodes to cells

#21 jkanche closed 5 years ago
3
Color reflecting cluster size/number instead of level

#20 tiagobrc closed 5 years ago
5
Pattern matching in clustree.data.frame

#19 lazappi closed 5 years ago
0
Producing clustering trees from seurat

#18 DrLucyMac closed 6 years ago
4
Error when loading clustree

#17 leonfodoulian closed 6 years ago
4
Add overlay functionality

#16 lazappi closed 6 years ago
0
Error if aesthetic name contains "-"

#15 lazappi closed 5 years ago
0
Error if clustree not loaded

#14 lazappi opened 6 years ago
3
ERROR in examples

#13 LuyiTian closed 5 years ago
3
Showing sample percentage

#12 lazappi closed 6 years ago
5
Do not match on complete error message of checkmate in tests

#11 mllg closed 6 years ago
6
Add edge_arrow_ends argument to clustree.matrix to flip arrows if wanted

#10 andreamrau closed 6 years ago
3
Default colour ordering

#9 lazappi closed 6 years ago
0
Layout

#8 lazappi closed 6 years ago
0
Pkgdown

#7 lazappi closed 6 years ago
0
Other node text aesthetics

#6 lazappi closed 6 years ago
0
Make new example data

#5 lazappi closed 6 years ago
1
Error if only one resolution provided

#4 lazappi closed 6 years ago
0

Previous Next