lazear / sage

Proteomics search & quantification so fast that it feels like magic
https://sage-docs.vercel.app
MIT License
201 stars 38 forks source link

Search using parquet files #125

Open prvst opened 3 months ago

prvst commented 3 months ago

Hello Michael, can I perform searches using parquet files that have been converted from raw? If not, do you intend to incorporate this as a feature?

Thanks.

lazear commented 3 months ago

Which parquet format are you using?

prvst commented 3 months ago

I'm using the Compomics converter

lazear commented 3 months ago

Gotcha - I'm working on a separate parquet-based format and will probably add a reader at some point. I don't think I will support the Compomics version (which doesn't have fields for ion mobility), but you could probably hack it in relatively easily if you used https://github.com/lazear/mz_parquet/blob/main/src/reader.rs for inspiration

prvst commented 3 months ago

That's nice. I don't have any dependency on their format, but It's good to know!