lazear / sage

Proteomics search & quantification so fast that it feels like magic
https://sage-docs.vercel.app
MIT License
201 stars 38 forks source link

TDF: Use spectrum index instead of precursor index #128

Closed RalfG closed 2 months ago

RalfG commented 2 months ago

Hi @lazear,

We had some issues matching Sage PSMs to spectra when read directly from TDF files. After conferring with @sander-willems-bruker, we found out there was some confusion in how precursor vs spectrum IDs are handled between different tools. For now, using the spectrum index seems to be the best way forward.

The PR also updates the timsrust version to 0.2.4.

lazear commented 2 months ago

Looks good to me - thanks!