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lazear / sage

Proteomics search & quantification so fast that it feels like magic
https://sage-docs.vercel.app
MIT License
210 stars 39 forks source link

Output directory #51

Closed maxochondria closed 1 year ago

maxochondria commented 1 year ago

How do you specify the output directory in the .json file? I defined the path as shown below but it seems that the results are not saved in the directory I specified and I cannot locate them. Is there a default path where I could retrieve them?

"output_paths": [ "/share/mlevasseur/bruker/scp/processed/sage/20230314/" ]

lazear commented 1 year ago

Huh, this isn't in the example config file! My bad!

Use the "output_directory" option in the JSON file, or alternatively, you can specify the output directory as a CLI argument:

{
   ...
   "output_directory": "/path/to/data" or "s3://bucket/prefix"
}

or

./sage config.json -o /path/to/data