Not sure where to find the documentation about the sage.result.tsv file, but could you confirm whether the label variable corresponds to decay (-1) and forward (1) hits.
That is correct! This is how target/decoys are specified for percolator. Decoy peptides should also have proteins with decoy tags as part of the identifier as well
Not sure where to find the documentation about the sage.result.tsv file, but could you confirm whether the label variable corresponds to decay (-1) and forward (1) hits.
Thank you!