Added additional output showing search progress if SAGE_LOG=trace environment variable is set
Added additional warnings about precursor tolerances
Added configuration option precursor_charge to make it explicit what charge states are being searched in the case where the mzML does not contain charge state information, or where wide_window is turned on.
Changed
Added a warning message if variable modifications are specified as single values (e.g. 15.9949) instead of lists of values (e.g. [15.9949]). By v0.15 this will become a hard error and will not parse, to simply some of the internal logic.
Internal changes to where file_ids are initially stored (now during mzML parsing) to enable efficient reporting of search progress, also changes when spectrum processing is done, and results in searching being done on a Vec<_> of spectra, not a Vec<Vec<_>>. The performance impact of this needs to be determined for large-scale searches.
Added
SAGE_LOG=traceenvironment variable is setprecursor_chargeto make it explicit what charge states are being searched in the case where the mzML does not contain charge state information, or wherewide_windowis turned on.Changed
15.9949) instead of lists of values (e.g.[15.9949]). By v0.15 this will become a hard error and will not parse, to simply some of the internal logic.Internal changes to where
file_ids are initially stored (now during mzML parsing) to enable efficient reporting of search progress, also changes when spectrum processing is done, and results in searching being done on aVec<_>of spectra, not aVec<Vec<_>>. The performance impact of this needs to be determined for large-scale searches.