Graphmap2 can't align dRNAseq reads with U

lbcb-sci / graphmap2

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1

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Graphmap2 can't align dRNAseq reads with U #7

Open lpryszcz opened 5 years ago

lpryszcz commented 5 years ago

Could you add U handling to graphmap? Then we won't have to convert U>T for dRNA-seq reads. Minimap2 handles it just fine ;)

jmaricb commented 5 years ago

@lpryszcz Yes, I will add the U support in the upcoming days. I will notify you when I do.