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lbcb-sci / herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
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CLR read model training #30

Open chklopp opened 4 months ago

chklopp commented 4 months ago

Are you intending to release a PacBio CLR correction model? If not, have you a procedure we could use to do it?

Cheers,

dominikstanojevic commented 4 months ago

Hello Christophe,

possibly in the future. For now, you can even try to error-correct CLR reads with the current model. Maybe just change mm2 args to -Hk19 -w10 or something similar when creating alignments.

Best regards, Dominik Stanojevic