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lbcb-sci / herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
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Download of Singularity image (current link is dead) #46

Open estolle opened 3 months ago

estolle commented 3 months ago

Hi there

Is there an alternative location from where one can DL the herro.sif?

the given link (wget http://metals.zesoi.fer.hr:9080/herro/herro.sif) is not working for me

I also could not DL the models from that location - but I was able to DL them from zenodo

As an alternative I tried compiling it, but I am having trouble with rust (error: linking with cc failed: exit status: 1). I cannot use dorado correct because the data i wanna correct is 9.4.1 and dorado only include the herro model for 10.4.

Thanks

hanqu24 commented 3 months ago

Hello,

Thank you for developing the tool! I have a similar issue here- I can't get the herro.sif using the link (wget http://metals.zesoi.fer.hr:9080/herro/herro.sif). I can get the models from zenodo. Is it possible to make the herro.sif available on zenodo?

Thanks again!

dominikstanojevic commented 2 months ago

Hello,

sorry for the late response. Can you try with the updated link:

wget -O herro.sif https://zenodo.org/records/13148100/files/herro.sif?download=1

colindaven commented 2 months ago

The updated singularity download link worked for me today:

wget -O herro.sif https://zenodo.org/records/13148100/files/herro.sif?download=1