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lbcb-sci / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
MIT License
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[cudaaligner] update cuda aligner max alignments calc #36

Closed tijyojwad closed 4 years ago

tijyojwad commented 4 years ago

  1. use mean and std deviation information about alignment sizes to calcualte cuda aligner batch size

  2. use cmdline batch count as count per GPU, instead of total batch count

Addresses some issues raised in https://github.com/lbcb-sci/racon/issues/30

tijyojwad commented 4 years ago

@rvaser just giving a heads up about this PR