Closed X-WJ closed 3 years ago
X-WJ
commented
4 years ago I solved it by editing this file .
/project/software/racon/racon-v1.4.13/vendor/spoa/CMakeLists.txt
if (spoa_optimize_for_portability)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=armv8-a")
elseif (spoa_optimize_for_native)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=nativa )
endif()
also edit this file
copy sse2neon.h to thie dir of simd_alignment_engine.cpp where is
edit simd_alignment_engine.cpp
// #include
rvaser
commented
4 years ago Hello, I am aware that the current implementation is not compatible with ARM platforms (see https://github.com/isovic/racon/issues/151), but did not have the time yet to solve it.
Best regards, Robert
rvaser
commented
3 years ago We have updated spoa inside racon to the latest version, which has various compilation parameters that can be used for different platforms (e.g. SIMDe).
I try to intasll racon on arm platform but here are some errors : make VERBOSE=1 /usr/local/src/cmake-3.6.2/bin/cmake -H/project/software/racon/racon-v1.4.13 -B/project/software/racon/racon-v1.4.13/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/src/cmake-3.6.2/bin/cmake -E cmake_progress_start /project/software/racon/racon-v1.4.13/build/CMakeFiles /project/software/racon/racon-v1.4.13/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory
/project/software/racon/racon-v1.4.13/build' make -f vendor/edlib/CMakeFiles/edlib_static.dir/build.make vendor/edlib/CMakeFiles/edlib_static.dir/depend make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' cd /project/software/racon/racon-v1.4.13/build && /usr/local/src/cmake-3.6.2/bin/cmake -E cmake_depends "Unix Makefiles" /project/software/racon/racon-v1.4.13 /project/software/racon/racon-v1.4.13/vendor/edlib /project/software/racon/racon-v1.4.13/build /project/software/racon/racon-v1.4.13/build/vendor/edlib /project/software/racon/racon-v1.4.13/build/vendor/edlib/CMakeFiles/edlib_static.dir/DependInfo.cmake --color= make[2]: Leaving directory/project/software/racon/racon-v1.4.13/build' make -f vendor/edlib/CMakeFiles/edlib_static.dir/build.make vendor/edlib/CMakeFiles/edlib_static.dir/build make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' make[2]: Nothing to be done forvendor/edlib/CMakeFiles/edlib_static.dir/build'. make[2]: Leaving directory/project/software/racon/racon-v1.4.13/build' [ 6%] Built target edlib_static make -f vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build.make vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/depend make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' cd /project/software/racon/racon-v1.4.13/build && /usr/local/src/cmake-3.6.2/bin/cmake -E cmake_depends "Unix Makefiles" /project/software/racon/racon-v1.4.13 /project/software/racon/racon-v1.4.13/vendor/bioparser/vendor/zlib /project/software/racon/racon-v1.4.13/build /project/software/racon/racon-v1.4.13/build/vendor/bioparser/vendor/zlib /project/software/racon/racon-v1.4.13/build/vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/DependInfo.cmake --color= make[2]: Leaving directory/project/software/racon/racon-v1.4.13/build' make -f vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build.make vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' make[2]: Nothing to be done forvendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build'. make[2]: Leaving directory/project/software/racon/racon-v1.4.13/build' [ 56%] Built target zlibstatic make -f vendor/spoa/CMakeFiles/spoa.dir/build.make vendor/spoa/CMakeFiles/spoa.dir/depend make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' cd /project/software/racon/racon-v1.4.13/build && /usr/local/src/cmake-3.6.2/bin/cmake -E cmake_depends "Unix Makefiles" /project/software/racon/racon-v1.4.13 /project/software/racon/racon-v1.4.13/vendor/spoa /project/software/racon/racon-v1.4.13/build /project/software/racon/racon-v1.4.13/build/vendor/spoa /project/software/racon/racon-v1.4.13/build/vendor/spoa/CMakeFiles/spoa.dir/DependInfo.cmake --color= make[2]: Leaving directory/project/software/racon/racon-v1.4.13/build' make -f vendor/spoa/CMakeFiles/spoa.dir/build.make vendor/spoa/CMakeFiles/spoa.dir/build make[2]: Entering directory/project/software/racon/racon-v1.4.13/build' [ 59%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o cd /project/software/racon/racon-v1.4.13/build/vendor/spoa && /usr/bin/c++ -I/project/software/racon/racon-v1.4.13/src -I/project/software/racon/racon-v1.4.13/vendor/spoa/include -Wall -Wextra -pedantic -Wall -Wextra -pedantic -march=native -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /project/software/racon/racon-v1.4.13/vendor/spoa/src/alignment_engine.cpp /project/software/racon/racon-v1.4.13/vendor/spoa/src/alignment_engine.cpp:1:0: error: unknown value ‘native’ for -marchmy gcc version and cmake info is gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39) Copyright (C) 2015 Free Software Foundation, Inc. cmake version 3.6.2
Best Regrads