Re-enable GPU features in racon_wrapper

lbcb-sci / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

MIT License

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Re-enable GPU features in racon_wrapper #53

Open schorlton opened 3 years ago

schorlton commented 3 years ago

I'm not exactly sure why but at some point (https://github.com/lbcb-sci/racon/commit/31a3c92878d19a9ef31462193e6a7862e6fe1611), the GPU features got commented out of the racon_wrapper. This PR simply re-enables them by uncommenting them. I tested with --cudapoa-batches and seems to work.

rvaser commented 3 years ago

Hello, I will have to update CMake build in order to enable GPU options in wrapper, otherwise the wrapper breaks if racon was not build with GPU support. Not sure why we did not do that earlier, need to think if there is anything else problematic.

Best regards, Robert

schorlton commented 3 years ago

I see. I guess I did not hit this as a compiled with GPU support.

rvaser commented 3 years ago

Can you please try out the latest commit?