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lbcb-sci / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
MIT License
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warning: contig XXX might be chimeric in window XX! #65

Open Neo-xbx-00 opened 2 years ago

Neo-xbx-00 commented 2 years ago

Hello, I was new in using Racon for polishing. In my log file, I found some warning like this: [racon::Window::generate_consensus] warning: contig 670 might be chimeric in window 48!

I wonder why it generated and what it means for? Thank you !

rvaser commented 2 years ago

Hello, You can ignore the warning, it pops up if a window inside the contig has uneven coverage.

Best regards, Robert

Neo-xbx-00 commented 2 years ago

Hello, You can ignore the warning, it pops up if a window inside the contig has uneven coverage.

Best regards, Robert

Thank you for your nice reply!