YoshitakaMo
commented
1 month ago I've created Homebrew formula for racon 1.5.0. Please try brew install brewsci/bio/racon on Apple Silicon.
However, I noticed that ./racon-test failed on some unit tests on both Intel and M1 Macs, though all tests were passed on Linux OS.
$ /path/to/racon_test # after manual installation on Intel Mac
...
...
[racon::Polisher::initialize] loaded target sequences 0.017256 s
[racon::Polisher::initialize] loaded sequences 0.017341 s
[racon::Polisher::initialize] loaded overlaps 0.003315 s
[racon::Polisher::initialize] aligning overlaps [====================] 3.256364 s
[racon::Polisher::initialize] transformed data into windows 0.033123 s
[racon::Polisher::polish] generating consensus [====================] 6.708137 s
/tmp/racon-20240810-87726-qxpzm/test/racon_test.cpp:294: Failure
Expected equality of these values:
total_length
Which is: 1658386
1658216
[racon::Polisher::] total = 10.036378 s
[ FAILED ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (10043 ms)
[----------] 10 tests from RaconPolishingTest (35330 ms total)
[----------] Global test environment tear-down
[==========] 15 tests from 2 test suites ran. (35340 ms total)
[ PASSED ] 6 tests.
[ FAILED ] 9 tests, listed below:
[ FAILED ] RaconPolishingTest.ConsensusWithQualities
[ FAILED ] RaconPolishingTest.ConsensusWithoutQualities
[ FAILED ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments
[ FAILED ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments
[ FAILED ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow
[ FAILED ] RaconPolishingTest.ConsensusWithQualitiesEditDistance
[ FAILED ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull
[ FAILED ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull
[ FAILED ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap
When trying to build racon on a computer with an apple-m1 chip it gives the error "error: unknown target CPU 'apple-m1' note: valid target CPU values are: nocona, core2, penryn, bonnell, atom, silvermont, slm, goldmont, goldmont-plus, tremont, nehalem, corei7, westmere, sandybridge, corei7-avx, ivybridge, core-avx-i, haswell, core-avx2, broadwell, skylake, skylake-avx512, skx, cascadelake, cooperlake, cannonlake, icelake-client, rocketlake, icelake-server, tigerlake, sapphirerapids, alderlake, knl, knm, k8, athlon64, athlon-fx, opteron, k8-sse3, athlon64-sse3, opteron-sse3, amdfam10, barcelona, btver1, btver2, bdver1, bdver2, bdver3, bdver4, znver1, znver2, znver3, x86-64, x86-64-v2, x86-64-v3, x86-64-v4" Could apple silicon chips be added? Thanks!