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lbcb-sci / raven

De novo genome assembler for long uncorrected reads
MIT License
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Contig length cutoff can be modified? #72

Open javieriserte opened 1 year ago

javieriserte commented 1 year ago

Reading other issue, i learnt that Raven has minimum contig length of 10 kpb. Can this value be modified?

gwl2 commented 1 year ago

This would be great indeed!

rvaser commented 1 year ago

Hello, you can try and do it manually here https://github.com/lbcb-sci/raven/blob/master/RavenLib/src/graph.cc#L7 and recompile.

Best regards, Robert

lipi0056 commented 1 year ago

This was added as a command line option, so you can specify it with -u, or --min-unitig-size , default value is 9999

gwl2 commented 1 year ago

Thanks! Is the version with the command line option already released, or do I have to recompile as suggested above?

lipi0056 commented 1 year ago

You need to pull the latest master branch and rebuild